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Theories and models

Section edited by Laura Kubatko and Arne Traulsen

This section considers studies in mathematical modeling of evolutionary processes and research into theoretical areas.

Page 1 of 2

  2. Recovering the historical patterns of selection acting on a protein coding sequence is a major goal of evolutionary biology. Mutation-selection models address this problem by explicitly modelling fixation rate...

    Authors: Andrew M. Ritchie, Tristan L. Stark and David A. Liberles

    Citation: BMC Ecology and Evolution 2021 21:39

    Content type: Methodology article

    Published on:

  3. One of the dangers of global climate change to wildlife is distorting sex ratios by temperature-induced sex reversals in populations where sex determination is not exclusively genetic, potentially leading to p...

    Authors: Edina Nemesházi, Szilvia Kövér and Veronika Bókony

    Citation: BMC Ecology and Evolution 2021 21:16

    Content type: Research article

    Published on:

  4. Honeybees have extraordinary phenotypic plasticity in their senescence rate, making them a fascinating model system for the evolution of aging. Seasonal variation in senescence and extrinsic mortality results ...

    Authors: Natalie J. Lemanski, Siddhant Bansal and Nina H. Fefferman

    Citation: BMC Evolutionary Biology 2020 20:139

    Content type: Research article

    Published on:

  5. Tumors are widely recognized to progress through clonal evolution by sequentially acquiring selectively advantageous genetic alterations that significantly contribute to tumorigenesis and thus are termned driv...

    Authors: Patrick Grossmann, Simona Cristea and Niko Beerenwinkel

    Citation: BMC Evolutionary Biology 2020 20:89

    Content type: Methodology article

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  7. We hypothesize prebiotic evolution of self-replicating macro-molecules (Alberts, Molecular biology of the cell, 2015; Orgel, Crit Rev Biochem Mol Biol 39:99-123, 2004; Hud, Nat Commun 9:5171) favoured the cons...

    Authors: Hemachander Subramanian, Joel Brown and Robert Gatenby

    Citation: BMC Evolutionary Biology 2020 20:75

    Content type: Research article

    Published on:

  8. Individuals consistently differ in behaviour, exhibiting so-called personalities. In many species, individuals differ also in their cognitive abilities. When personalities and cognitive abilities occur in dist...

    Authors: Jannis Liedtke and Lutz Fromhage

    Citation: BMC Evolutionary Biology 2019 19:234

    Content type: Research article

    Published on:

  9. Mutators are common in bacterial populations, both in natural isolates and in the lab. The fate of these lineages, which mutation rate is increased up to 100 ×, has long been studied using population genetics ...

    Authors: Jacob Pieter Rutten, Paulien Hogeweg and Guillaume Beslon

    Citation: BMC Evolutionary Biology 2019 19:191

    Content type: Research Article

    Published on:

  10. Organisms are expected to respond to changing environmental conditions through local adaptation, range shift or local extinction. The process of local adaptation can occur by genetic changes or phenotypic plas...

    Authors: Daniel Romero-Mujalli, Florian Jeltsch and Ralph Tiedemann

    Citation: BMC Evolutionary Biology 2019 19:175

    Content type: Research article

    Published on:

  11. The evolution of multi-cellular animals has produced a conspicuous trend toward increased body size. This trend has introduced at least two novel problems: an expected elevated risk of somatic disorders, such ...

    Authors: Andrii Rozhok and James DeGregori

    Citation: BMC Evolutionary Biology 2019 19:172

    Content type: Research article

    Published on:

  12. For the understanding of human nature, the evolutionary roots of human moral behaviour are a key precondition. Our question is as follows: Can the altruistic moral rule “Risk your life to save your family memb...

    Authors: József Garay, Barnabás M. Garay, Zoltán Varga, Villő Csiszár and Tamás F. Móri

    Citation: BMC Evolutionary Biology 2019 19:147

    Content type: Research article

    Published on:

  13. Local adaptation of marine and diadromous species is thought to be a product of larval dispersal, settlement mortality, and differential reproductive success, particularly in heterogeneous post-settlement habi...

    Authors: Kristine N. Moody, Johanna L. K. Wren, Donald R. Kobayashi, Michael J. Blum, Margaret B. Ptacek, Richard W. Blob, Robert J. Toonen, Heiko L. Schoenfuss and Michael J. Childress

    Citation: BMC Evolutionary Biology 2019 19:88

    Content type: Research article

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  15. An excess of nonsynonymous substitutions, over neutrality, is considered evidence of positive Darwinian selection. Inference for proteins often relies on estimation of the nonsynonymous to synonymous ratio (ω = d

    Authors: Katherine A. Dunn, Toby Kenney, Hong Gu and Joseph P. Bielawski

    Citation: BMC Evolutionary Biology 2019 19:22

    Content type: Methodology article

    Published on:

  16. A strong variability in cancer incidence is observed between human organs. Recently, it has been suggested that the relative contribution of organs to organism fitness (reproduction or survival) could explain ...

    Authors: Cindy Gidoin, Beata Ujvari, Frédéric Thomas and Benjamin Roche

    Citation: BMC Evolutionary Biology 2018 18:185

    Content type: Research article

    Published on:

  17. Following recent advances in bioimaging, high-resolution 3D models of biological structures are now generated rapidly and at low-cost. To use this data to address evolutionary and ecological questions, an arra...

    Authors: James D. Gardiner, Julia Behnsen and Charlotte A. Brassey

    Citation: BMC Evolutionary Biology 2018 18:184

    Content type: Methodology article

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  18. Macroevolutionary modeling of species diversification plays important roles in inferring large-scale biodiversity patterns. It allows estimation of speciation and extinction rates and statistically testing the...

    Authors: Jingchun Li, Jen-Pen Huang, Jeet Sukumaran and L. Lacey Knowles

    Citation: BMC Evolutionary Biology 2018 18:123

    Content type: Research article

    Published on:

  19. Phylogenetic comparative methods allow us to test evolutionary hypotheses without the benefit of an extensive fossil record. These methods, however, make simplifying assumptions, among them that clades are alw...

    Authors: Andrew G. Simpson, Peter J. Wagner, Scott L. Wing and Charles B. Fenster

    Citation: BMC Evolutionary Biology 2018 18:69

    Content type: Methodology article

    Published on:

  22. Recently, important discoveries regarding the archaeon that functioned as the “host” in the merger with a bacterium that led to the eukaryotes, its “complex” nature, and its phylogenetic relationship to eukary...

    Authors: P.T.S. van der Gulik, W.D. Hoff and D. Speijer

    Citation: BMC Evolutionary Biology 2017 17:218

    Content type: Review

    Published on:

  23. Estimating the variability in isolation times across co-distributed taxon pairs that may have experienced the same allopatric isolating mechanism is a core goal of comparative phylogeography. The use of hierar...

    Authors: Isaac Overcast, Justin C. Bagley and Michael J. Hickerson

    Citation: BMC Evolutionary Biology 2017 17:203

    Content type: Methodology article

    Published on:

  25. B4galnt2 is a blood group-related glycosyltransferase that displays cis-regulatory variation for its tissue-specific expression patterns in house mice. The wild type allele, found e.g....

    Authors: Marie Vallier, Maria Abou Chakra, Laura Hindersin, Miriam Linnenbrink, Arne Traulsen and John F. Baines

    Citation: BMC Evolutionary Biology 2017 17:187

    Content type: Research article

    Published on:

  26. Hundreds of herbarium collections have accumulated a valuable heritage and knowledge of plants over several centuries. Recent initiatives started ambitious preservation plans to digitize this information and m...

    Authors: Jose Carranza-Rojas, Herve Goeau, Pierre Bonnet, Erick Mata-Montero and Alexis Joly

    Citation: BMC Evolutionary Biology 2017 17:181

    Content type: Research Article

    Published on:

  29. Over the last 300 years, interactions between alewives and zooplankton communities in several lakes in the U.S. have caused the alewives’ morphology to transition rapidly from anadromous to landlocked. Lakes w...

    Authors: Jung koo Kang and Xavier Thibert-Plante

    Citation: BMC Evolutionary Biology 2017 17:58

    Content type: Research Article

    Published on:

  31. Blindness has evolved repeatedly in cave-dwelling organisms, and many hypotheses have been proposed to explain this observation, including both accumulation of neutral loss-of-function mutations and adaptation...

    Authors: Reed A. Cartwright, Rachel S. Schwartz, Alexandra L. Merry and Megan M. Howell

    Citation: BMC Evolutionary Biology 2017 17:45

    Content type: Research Article

    Published on:

  32. Gene duplication has been identified as a key process driving functional change in many genomes. Several biological models exist for the evolution of a pair of duplicates after a duplication event, and it is b...

    Authors: Tristan L. Stark, David A. Liberles, Barbara R. Holland and Małgorzata M. O’Reilly

    Citation: BMC Evolutionary Biology 2017 17:38

    Content type: Research Article

    Published on:

  35. Colour polymorphic species provide invaluable insight into processes that generate and maintain intra-specific variation. Despite an increasing understanding of the genetic basis of discrete morphs, sources of...

    Authors: Katrina J. Rankin, Claire A. McLean, Darrell J. Kemp and Devi Stuart-Fox

    Citation: BMC Evolutionary Biology 2016 16:179

    Content type: Research article

    Published on:

  36. Social learning is potentially advantageous, but evolutionary theory predicts that (i) its benefits may be self-limiting because social learning can lead to information parasitism, and (ii) these limitations c...

    Authors: Daniel J. van der Post, Mathias Franz and Kevin N. Laland

    Citation: BMC Evolutionary Biology 2016 16:166

    Content type: Research Article

    Published on:

  37. Human influenza virus A/H3N2 undergoes rapid adaptive evolution in response to host immunity. Positively selected amino acid substitutions have been detected mainly in the hemagglutinin (HA) segment. The genea...

    Authors: Kangchon Kim and Yuseob Kim

    Citation: BMC Evolutionary Biology 2016 16:156

    Content type: Research article

    Published on:

  39. Organisms have evolved a variety of defence mechanisms against natural enemies, which are typically used at the expense of other life history components. Induced defence mechanisms impose minor costs when path...

    Authors: Tsukushi Kamiya, Leonardo Oña, Bregje Wertheim and G. Sander van Doorn

    Citation: BMC Evolutionary Biology 2016 16:92

    Content type: Research Article

    Published on:

  40. Mixed dispersal syndromes have historically been regarded as a bet-hedging mechanism that enhances survivorship in unpredictable environments, ensuring that some propagules stay in the maternal environment whi...

    Authors: Jorge Hidalgo, Rafael Rubio de Casas and Miguel Á.Muñoz

    Citation: BMC Evolutionary Biology 2016 16:71

    Content type: Research Article

    Published on:

  41. Darwin and the architects of the Modern Synthesis found sympatric speciation difficult to explain and suggested it is unlikely to occur. Increasingly, evidence over the past few decades suggest that sympatric ...

    Authors: Wayne M. Getz, Richard Salter, Dana Paige Seidel and Pim van Hooft

    Citation: BMC Evolutionary Biology 2016 16:50

    Content type: Research article

    Published on:

  42. Dosage balance has been described as an important process for the retention of duplicate genes after whole genome duplication events. However, dosage balance is only a temporary mechanism for duplicate gene re...

    Authors: Ashley I. Teufel, Liang Liu and David A. Liberles

    Citation: BMC Evolutionary Biology 2016 16:45

    Content type: Research article

    Published on:

  45. The glucose effect is a well known phenomenon whereby cells, when presented with two different nutrients, show a diauxic growth pattern, i.e. an episode of exponential growth followed by a lag phase of reduced...

    Authors: Dominique F. Chu

    Citation: BMC Evolutionary Biology 2015 15:211

    Content type: Research Article

    Published on:

  46. Recent methodological advances allow better examination of speciation and extinction processes and patterns. A major open question is the origin of large discrepancies in species number between groups of the s...

    Authors: Sacha Laurent, Marc Robinson-Rechavi and Nicolas Salamin

    Citation: BMC Evolutionary Biology 2015 15:157

    Content type: RESEARCH COLLECTION

    Published on:

  47. The quasispecies model refers to information carriers that undergo self-replication with errors. A quasispecies is a steady-state population of biopolymer sequence variants generated by mutations from a master...

    Authors: Renan Gross, Itzhak Fouxon, Doron Lancet and Omer Markovitch

    Citation: BMC Evolutionary Biology 2014 14:265

    Content type: Research article

    Published on:

  48. The allele frequency spectrum (AFS) consists of counts of the number of single nucleotide polymorphism (SNP) loci with derived variants present at each given frequency in a sample. Multiple approaches have rec...

    Authors: John D Robinson, Alec J Coffman, Michael J Hickerson and Ryan N Gutenkunst

    Citation: BMC Evolutionary Biology 2014 14:254

    Content type: Research article

    Published on:

  49. The value of a continuous character evolving on a phylogenetic tree is commonly modelled as the location of a particle moving under one-dimensional Brownian motion with constant rate. The Brownian motion model...

    Authors: Michael G Elliot and Arne Ø Mooers

    Citation: BMC Evolutionary Biology 2014 14:226

    Content type: Methodology Article

    Published on:

  50. RNA or RNA-like polymers are the most likely candidates for having played the lead roles on the stage of the origin of life. RNA is known to feature two of the three essential functions of living entities (met...

    Authors: Balázs Könnyű and Tamás Czárán

    Citation: BMC Evolutionary Biology 2014 14:234

    Content type: Research article

    Published on:

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