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Reciprocal positive effects on parasitemia between coinfecting haemosporidian parasites in house sparrows
BMC Ecology and Evolution volume 22, Article number: 73 (2022)
Hosts are often simultaneously infected with several parasite species. These co-infections can lead to within-host interactions of parasites, including mutualism and competition, which may affect both virulence and transmission. Birds are frequently co-infected with different haemosporidian parasites, but very little is known about if and how these parasites interact in natural host populations and what consequences there are for the infected hosts. We therefore set out to study Plasmodium and Haemoproteus parasites in house sparrows Passer domesticus with naturally acquired infections using a protocol where the parasitemia (infection intensity) is quantified by qPCR separately for the two parasites. We analysed infection status (presence/absence of the parasite) and parasitemia of parasites in the blood of both adult and juvenile house sparrows repeatedly over the season.
Haemoproteus passeris and Plasmodium relictum were the two dominating parasite species, found in 99% of the analyzed Sanger sequences. All birds were infected with both Plasmodium and Haemoproteus parasites during the study period. Seasonality explained infection status for both parasites in the adults: H. passeris was completely absent in the winter while P. relictum was present all year round. Among adults infected with H. passeris there was a positive effect of P. relictum parasitemia on H. passeris parasitemia and likewise among adults infected with P. relictum there was a positive effect of H. passeris parasitemia on P. relictum parasitemia. No such associations on parasitemia were seen in juvenile house sparrows.
The reciprocal positive relationships in parasitemia between P. relictum and H. passeris in adult house sparrows suggests either mutualistic interactions between these frequently occurring parasites or that there is variation in immune responses among house sparrow individuals, hence some individuals suppress the parasitemia of both parasites whereas other individuals suppress neither. Our detailed screening of haemosporidian parasites over the season shows that co-infections are very frequent in both juvenile and adult house sparrows, and since co-infections often have stronger negative effects on host fitness than the single infection, it is imperative to use screening systems with the ability to detect multiple parasites in ecological studies of host-parasite interactions.
Hosts are frequently infected with more than one parasite species [1, 2]. As a consequence the co-infecting parasites share the host environment and in many cases also the host resources. It is noteworthy that co-infections often have stronger negative effects on host survival and fitness than single infections of each parasite species [3,4,5,6]. Birds are for example infected with a wide range of different avian haemosporidian parasites, i.e. malaria parasites (genus Plasmodium) and related parasites of the genus Haemoproteus. A single bird species can often be the host of ten different avian haemosporidian species [7, 8] and avian malaria can have severe fitness consequences for infected individuals .
During co-infections, the parasite species may interact in the host and these interactions can result in different consequences not only for the parasites but also for the host, i.e. varying severity of disease. There may for example be competition between the parasite species, where both parasite species suffer negative consequences in response to the presence of the other parasite species [10,11,12]. Facilitation can also occur, in which one or both species benefits from the interaction. In the commensal form of facilitation, one parasite benefits while the other is unaffected, and in mutualism, both parasites benefit from one another’s presence [13, 14].
In the case of malaria parasites, within-host interactions have gained considerable interest, both when studying natural occurrences of malaria infections in humans [15, 16] and also when using mice as a model species in the laboratory . The human malaria parasites Plasmodium falciparum and Plasmodium vivax are often found in co-infections . Studies of these two human malaria parasites have provided good examples of facilitation, where the presence of one parasite species favours the presence of the other species . Facilitation occurs because P. falciparum is able to infect red blood cells (RBC) of all ages (mature and immature) leading to high levels of anaemia which force the host to generate new RBCs . These new immature RBCs are the preferred resource of P. vivax and therefore P. vivax gains resources (immature RBCs) from the acute anaemia caused by the infection of P. falciparum . However, other studies of malaria in humans have found different patterns of interactions between P. falciparum and P. vivax, suggesting that the within-host interactions are complex and context dependent [21,22,23]. It is challenging to study within-host interactions of haemosporidian parasites during co-infections in natural populations of wild animals, not only due to the need to recapture individuals but mainly because the occurrence of co-infections varies with many other temporal patterns over the season, such as vector abundance and infection status (presence/absence of the parasite in the blood) (reviewed in ).
Thus far co-infections of avian malaria have been studied experimentally in the laboratory by inoculation using different species of Plasmodium parasites. Palinauskas et al. (2011)  studied co-infections of the two avian malaria parasites Plasmodium ashfordi and Plasmodium relictum (specifically the lineage SGS1), and found that co-infections tended to have higher peak parasitemia than each of the two single infections, suggesting facilitation. In another experimental study Palinauskas et al. (2018) investigated co-infections of the avian malaria parasites Plasmodium elongatum and P. relictum (specifically the lineage SGS1) and again reported evidence of facilitation, specifically commensalism, with P. elongatum reaching higher P. elongatum parasitemia in the presence of P. relictum  but not vise versa.
Experimental set-ups and/or model host species have advantages in the study of co-infections but also limitations considering for example effects of natural diversity and artificial infections. We therefore set out to study co-infections of naturally occurring haemosporidian parasites which have had the opportunity to co-evolve in their natural host. House sparrows Passer domesticus in Spain are frequently infected with haemosporidian parasites [27,28,29], and provide an excellent study system for investigating co-infections of naturally occurring parasites in wild birds. The dominating haemosporidian species in house sparrows in southern Spain are P. relictum (lineages SGS1 and GRW11) and Haemoproteus passeris (specifically lineage PADOM05) . Plasmodium relictum is an extreme host-generalist infecting more than 120 different bird species worldwide, whereas H. passeris is a host-specialist restricted to the genus Passer . Haemoproteus passeris withdraw from the blood during the autumn and winter when it remains in internal organs, and thus cannot be detected by regular screening of blood samples and is considered a chronic and life-long infection. The prevalence of P. relictum in Spain is known to be highest in late spring and early autumn , and subsequently the two parasites H. passeris and P. relictum mainly have opportunity to interact in the bird blood during the summer months.
The parasitemia of haemosporidian parasites in bird blood is known to reach high levels during the acute phase of infection. The acute phase is followed by the chronic phase with low parasitemia, a level that in some cases can be below the detection limit. Moreover, in seasonal environments, some species of haemosporidian parasites completely withdraw from the blood, as mentioned above, and only remain in internal organs until conditions for transmission are favourable . Accordingly, yearly relapses of infection can be measured in bird blood, though, relapses cannot be distinguished from secondary infections unless birds are kept under vector-controlled regimes. In our house sparrow study system relapses with comparatively low parasitemia are expected to be frequent in adult birds while novel infections with comparatively high infection intensities are expected to be frequent in juveniles.
We investigated the occurrence of haemosporidian parasites in the birds’ blood using repeated measures within individuals to monitor the infection status and parasitemia over the season in both adult and juvenile house sparrows. The birds were kept in outdoor aviaries, where they could be naturally infected with haemosporidian parasites by locally occurring vectors. Our main aim is to analyse and evaluate the consequences of co-infections, both considering infection status and parasitemia, with the distantly related haemosporidian parasites P. relictum and H. passeris. We expect the infection status of the parasites to vary over the season and we hypothesize that the parasitemia per parasite species will increase in co-infections.
Infection status of Plasmodium and Haemoproteus in adults and juveniles
Analyses by Sanger sequencing showed that 19 out of the 21 adult house sparrows were infected by both the haemosporidian parasites P. relictum (lineages SGS1 (N = 50) and GRW11 (N = 1)) and H. passeris (lineage PADOM05, N = 82, Additional file 1). The downstream analyses will be based on these 19 adults, which were infected with both parasites (Table 1, Additional file 2). Plasmodium relictum and H. passeris were detected in the birds’ blood at multiple sampling occasions (and frequently together) throughout the study period between February 2016 and September 2017 (Fig. 1). Likewise, analyses by Sanger sequencing combined with qPCR showed that 12 out of the 15 juveniles were infected by both the haemosporidian parasites P. relictum (lineage SGS1 (N = 12, Sanger sequences retrieved from seven different individuals) and H. passeris (lineage PADOM05, N = 50, Sanger sequences retrieved from 12 individuals, Additional file 1). Note however that another Plasmodium parasite, PAGRI02, was detected at two occasions in two juveniles in late autumn (Additional file 1). The downstream analyses will be based on 11 juveniles, which were infected with both H. passeris and Plasmodium, either SGS1 and/or PAGRI02, and sampled at least three times (Table 1, Additional file 2). Plasmodium and H. passeris were detected in the birds’ blood of juveniles at multiple time points (and frequently together) throughout the study period between July and October 2016 (Fig. 2).
Infection status of both H. passeris and P. relictum vary over the season in adult birds
The infection status (presence/absence of the parasite in the blood) of H. passeris in adult sparrows differed between years (F = 11.38, df = 1, 136, P = 0.001) and months (F = 3.29, df = 6, 136, P = 0.0047, Fig. 1). The seasonal pattern was that H. passeris was absent in the winter, frequent in the spring and early summer, and then rare in late summer and autumn. The infection status of H. passeris was not affected by the P. relictum parasitemia (P = 0.53). Individual identity was included as a random factor in the model and had a significant effect on the infection status of H. passeris (Δ2LL = 19.2, P < 0.001). The infection status of P. relictum in adults was dependent on month (F = 456.04, df = 6, 131, P < 0.001, Fig. 1), but not on year (F = 0, df = 1, 131, P = 0.98), although there was an interaction between year and month (F = 3.51, df = 4, 131, P < 0.0093). Haemoproteus passeris parasitemia (P = 0.16) and individual identity (Δ2LL = 0) had no effect on the infection status of P. relictum in adult house sparrows. Co-infections were not more frequent than expected by chance (Fisher’s exact test, separate analyses for July, August, and September 2016 (N = 19 for each month): P = 0.141−0.579).
Infection status of H. passeris and Plasmodium do not vary over the season in juveniles
The infection status of H. passeris in juveniles did not differ between weeks (F = 1.34, df = 6, 53, P = 0.25, Fig. 2), there was no effects of Plasmodium parasitemia on infection status of H. passeris (F = 2.50, df = 1, 59, P = 0.12) and no effect of the random factor individual identity (individual: Δ2LL = 2.96, P = 0.08). The infection status of Plasmodium in juveniles did not differ between weeks (F = 4.75, df = 6, 54, P = 0.062, Fig. 2), and there were no effects of H. passeris parasitemia (P = 0.82) or individual identity (individual: Δ2LL = 0) on infection status of Plasmodium.
Reciprocal positive relationships between P. relictum and H. passeris parasitemia in adult house sparrows
Our dataset did not allow us to compare the parasitemia in single and co-infection since most individuals carried both parasites. We therefore set out to analyse the consequences of co-infections by measuring the parasitemia per parasite in infected individuals. First, we investigated the consequences of the P. relictum parasitemia in individuals that had H. passeris in the blood. The parasitemia of H. passeris in adults (including only data points when an individual was blood-positive for H. passeris in the analysis) differed between years (F = 6.66, df = 1, 61, P = 0.012) and months (F = 4.49, df = 5, 61, P = 0.0015, Fig. 1). The parasitemia of H. passeris was positively correlated with the parasitemia of P. relictum (F = 4.71, df = 1, 61, P = 0.034, Fig. 3A). Thus, individuals that were infected with H. passeris had higher infection intensities when the P. relictum parasitemia was higher. The random factor individual had a significant effect on the H. passeris parasitemia (Δ2LL = 9.62, P = 0.002).
Second, we investigated the consequences of the H. passeris parasitemia in individuals that had P. relictum in the blood. The parasitemia of P. relictum in adults (including only data points when an individual was blood-positive for P. relictum in the analysis) differed between months (F = 2.44, df = 6, 78, P = 0.033, Fig. 1), but there was no effect of year (P > 0.13), and no interaction between year and month (P > 0.39). The parasitemia of P. relictum was positively correlated with the parasitemia of H. passeris (F = 4.96, df = 1, 78, P = 0.029, Fig. 3B), i.e., individuals that were infected with P. relictum had higher infection intensities when the H. passeris parasitemia was higher. No effect of individual was observed (individual: Δ2LL = 0).
No relationships between Plasmodium and H. passeris parasitemia in juveniles
Then we did the same parasitemia analyses in the juveniles. The parasitemia of H. passeris in juveniles (including only data points when an individual was blood-positive for H. passeris in the analysis) differed between weeks (F = 7.93, df = 6, 35, P < 0.0001, Fig. 2), but there was no effect of the parasitemia of Plasmodium (P = 0.14), or individual identity (Δ2LL = 0, Fig. 4A). The parasitemia of Plasmodium in juveniles (including only data points when an individual was blood-positive Plasmodium in the analysis) was not affected by week (P = 0.17), by H. passeris parasitemia (P = 0.32), or by individual identity (Δ2LL = 0, Figs. 2 and 4B).
Juvenile house sparrows have higher parasitemia than adults
The parasitemia of H. passeris and P. relictum/Plasmodium was measured in both adult and juvenile sparrows from late July until early October 2016 (week 30–43). We used this subset of the data to compare parasitemia (including only individuals with parasitemias > 0) between age classes. Juveniles had significantly higher parasitemia than adults for H. passeris in this particular time period (F = 14.33, df = 1, 139, P = 0.0002, Fig. 5). The parasitemia varied between weeks (F = 6.83, df = 6, 139, P < 0.0001), but there was no effect of the random factor individual (Δ2LL = 0). For P. relictum/Plasmodium, the difference in parasitemia between adults and juveniles was significant in this particular time period (F = 7.52, df = 1, 136, P = 0.0069, Fig. 5), though not straightforward to interpret as there was a significant interaction between age and week (F = 2.87, df = 3, 136, P = 0.039), again without any effect of the random factor individual (Δ2LL = 0). Moreover, we cannot exclude that the putative mix of Plasmodium strains (SGS1 and PAGRI02) in juveniles, as indicated by Sanger sequencing, can have an impact on the analysis of the latter.
Both juvenile and adult sparrows were frequently co-infected with H. passeris and P. relictum and potential within-host interactions between these two haemosporidian parasites during their blood stages could therefore be studied in both age classes. The haemosporidian parasites in the juvenile sparrows in the present study are most likely primary infections, as indicated by the high parasitemia compared to the adults and the haemosporidian life cycle where the first peak parasitemia was reached after our sampling begun . The haemosporidian parasites in adults on the other hand are likely to be relapses due to significantly lower parasitemias than in juveniles and the high prevalence of infections among all the studied adult birds. However, it cannot be completely excluded that some of the relapses are secondary infections since we only have used an observational approach to study co-infections of haemosporidian parasites, i.e. without vector-controlled regimes. Note, since all individuals carried both the haemosporidian parasites we were not able to test if the parasitemia differed between individuals with single infection and co-infection, but we could test to what extent the H. passeris and P. relictum / Plasmodium parasitemias co-varied in co-infections.
On sampling days when adult birds were blood-positive for H. passeris, their H. passeris parasitemia was higher when they also had high P. relictum parasitemia. Likewise, when adult birds were blood-positive for P. relictum, their P. relictum parasitemia was higher when they also had high H. passeris parasitemia. In both these cases the parasitemias were significantly positively correlated, thus, our data suggest facilitation, more specifically mutualism , between P. relictum and H. passeris during co-infections in adult house sparrows. Although the potential mechanisms behind such facilitation processes are unknown for birds and the interaction of the parasites cannot be fully verified , we suggest that the parasite preferences for RBCs, i.e. for young or mature age classes of RBCs, could be one factor driving the facilitation process. Facilitation through altered resource availability, i.e. an increased proportion of immature RBCs, has been shown previously in both human and rodent malaria [17, 20]. Moreover, resource availability has also been proposed to drive the interaction between avian malaria parasite species in experiments where birds were inoculated with two different avian malaria (Plasmodium) species [25, 26].
Plasmodium relictum parasites prefer to infect mature RBCs, which leads to anaemia and the production of new immature RBCs [26, 32]. This production of new immature RBCs could facilitate the presence of H. passeris if it prefers immature RBCs too. There is no data so far concerning preferences of RBC age classes by H. passeris, but a preliminary working hypothesis could be that gametocytes from H. passeris can infect also immature RBCs. Previous studies have shown that immature RBCs can be more metabolically active cells than mature RBCs , which could lead to a longer life span of the H. passeris gametocyte. Such a mechanism would explain why H. passeris may gain an advantage from P. relictum, i.e. commensalism, but does not include a mechanism of how P. relictum benefits from H. passeris infection. An alternative or additional, explanation to the positive associations between H. passeris and P. relictum parasitemias could be that there is variation in immune responses among house sparrow individuals , such that some house sparrow individuals can handle both H. passeris and P. relictum relatively well whereas other house sparrow individuals can handle neither parasite satisfactory.
In contrast to previous studies, we have studied co-infections between haemosporidian parasites belonging to different genera, Plasmodium and Haemoproteus, and not between species within Plasmodium. Plasmodium and Haemoproteus use the same tissue, bird blood, and competition for the limited resource RBCs could therefore have been a likely outcome. However, the parasitemia of both P. relictum and H. passeris is rather moderate in the house sparrows and intense competition for RBCs is therefore less likely. Co-infections with P. relictum and H. passeris are frequent among European house sparrows in southern Spain but their peaks in prevalence differs between the species. Plasmodium relictum has two yearly peaks in prevalence, late spring and early autumn, whereas H. passeris peak in the summer in the wild . We cannot see such detailed temporal patterns in our limited experimental data but observed that sampling month had a significant effect on both infection status and parasitemia for both P. relictum and H. passeris in the adults.
Mutualism between H. passeris and P. relictum was not observed in juvenile house sparrows. The reason that we find mutualism in adult but not in juvenile sparrows could be due to differences in the immune response between the primary infection (acute phase in juveniles) and relapses (chronic phase in adults). For example, immune responses during the chronic phase are likely more specific than in the acute phase, and if it is difficult for the host to mount two different responses simultaneously, co-infecting parasites could benefit from the presence of each other. The lack of mutualism during co-infections in juveniles could simply be a result of lower statistical power, since we studied fewer individuals during a shorter time interval compared with adults.
Previous studies of co-infections of Plasmodium parasites in birds have inoculated two specific strains of avian malaria parasites to the bird host whereas we have screened for the prevalence of avian malaria in naturally infected bird hosts. Haemoproteus passeris reach higher infection intensities than P. relictum and in co-infections, and the detectability of P. relictum by Sanger sequencing of nested PCR-products is reduced. By running separate qPCRs for Haemoproteus and Plasmodium on every sample we overcome the methodological problem of Haemoproteus reducing the detectability of Plasmodium, but with our methodological design, we cannot exclude that some birds are infected with more than one Plasmodium strain/species. There is a high diversity of Plasmodium strains in house sparrows in southern Spain, although P. relictum is the dominating species [27, 30]. It is worth emphasizing the high repeatability (i.e. high variance among individuals) of H. passeris infection status and parasitemia in adult sparrows. In contrast, neither infection status nor parasitemia of P. relictum was repeatable in adults. This difference between H. passeris and P. relictum can be caused by differences in the parasites’ life cycles, where Haemoproteus species have their asexual stages (replication) restricted to internal organs, while Plasmodium species undergo asexual replication also in the blood .
Finally, several previous studies have reported higher parasitemia in juvenile birds compared to adults [36, 37], just in line with our findings in juvenile and adult house sparrows. However, a recent study comparing the parasitemia over the season in eight different bird species found substantial seasonal variation in both juveniles and adults but no overall difference in parasitemia between the age classes . It is evident that several different parameters need to be considered when comparing parasitemia between juveniles and adults in natural populations and longitudinal sampling of individuals is a rewarding approach. Blue tits infected with Haemoproteus majoris often carry this parasite as a life-long chronic infection and the parasitemia decreases with age (at least until the birds are very old), suggesting that the ability to suppress the Haemoproteus parasites improve with age. We followed the variation in the Haemoproteus parasitemia in both juveniles and adults, however in only partly overlapping time intervals (adults between May and October and juveniles between August and October). The parasitemia decreased over the season in both age classes, with the highest parasitemia for adults in June and for juveniles in August. In August and September, when both age classes were sampled, juveniles have significantly higher parasitemia. Though, we cannot test if the peak parasitemia, in the putative relapse in the adults and in the primary infection in juveniles, differs among the age classes.
Both adult and juvenile house sparrows were frequently co-infected by the two haemosporidian parasites P. relictum and H. passeris. In adult house sparrows there were reciprocal positive relationships in parasitemias, indicating either mutualism among the two parasites where both P. relictum and H. passeris gained from the presence of the other parasite or variation in immunocompetence among house sparrow individuals. The resulting higher parasitemia in co-infections is likely to result in stronger negative effects on host fitness during co-infection compared to single infections, though this remains to be tested in a suitable study system where haemosporidian parasites can be studied as both single- and co-infections.
Study site and experimental set up
Twenty-one adult wild house sparrows were captured with mist nets during February and June 2016 at the University Campus (38° 53′ 4.47″ N 07° 0′ 33.74″ W), and 15 juvenile house sparrows were captured in the surroundings of Badajoz city (38° 53′ 00″ N 06°58′ 00″ W) during June 2016. All birds were ringed with unique metal rings and then released into the aviaries located in the Experimental Garden at the University of Extremadura (38° 53′ 4.47″ N 07° 0′ 33.74″ W), southwest Spain. The aviaries have open-air conditions, and each cage is 3.5 × 1.5 × 2.5 m and contained up to eight individuals. Birds were provided with water and food ad libitum.
Prior to the initiation of the study, birds were kept in the aviaries to achieve acclimatization of a minimum of two weeks. We monitored infection status and parasitemia of adult house sparrows during 18 months and of juvenile house sparrows during three months. Thus, blood samples from adults were collected monthly from late February 2016 to September 2017, whereas juvenile blood sampling occurred every second week from late July to late October 2016. We collected a single microcapillary tube (40 μl) of blood from the brachial vein and stored it in 500 ml of SET buffer (0.15 M NaCl, 0.05 Tris, 0.001 M EDTA, pH 8.0) until DNA extraction for molecular analyses. We also obtained a blood smear from each individual in order to estimate parasitemia (the proportion of infected RBCs) from microscopic examinations. Four juveniles and 11 adult sparrows died during the experiment. Once the study was completed, the surviving individuals were released in their original habitat.
Molecular genetic screening of malaria parasites using Sanger sequencing
Haemosporidian parasites (Plasmodium and Haemoproteus spp.) were detected from blood samples using molecular methods. We used a standard ammonium acetate method  for DNA extraction. Genomic DNA was diluted to a concentration of 25 ng/µl for standard polymerase chain reaction (PCR). These samples were used as a template in a PCR assay for detection of the parasites using nested PCR protocols described by Waldenström et al. . The amplification was evaluated by running 2.5 µl of the final PCR product on a 2% agarose gel. All PCRs contained one negative control for every eight samples. Positive amplifications were Sanger sequenced at the DNA sequencing facility, Department of Biology, Faculty of Science, Lund University on a ABI PRISM 3130 genetic analyser (Applied Biosystems, New Jersey, USA). The obtained sequences were then compared against the MalAvi database  using BLASTn to identify the parasite lineages. The haemosporidian parasites in each sparrow individual were DNA sequenced repeatedly, using samples from several different time points (Additional file 1).
Quantification of malaria parasites
Blood samples were fixed in absolute methanol and stained with Giemsa as described by Valkiūnas et al. . Approximately 100 fields were examined at low magnification (400x) and then at least 30 fields were studied at high magnification (1000x). The parasitemia was estimated as a percentage by actual counting of the number of parasites per 1000 erythrocytes . One sample each with single infections of relatively high parasitemia, 0.98% for Haemoproteus and 2.9% for Plasmodium, were selected as reference samples for the real-time quantification PCR (qPCR) analysis. All samples were diluted to a DNA concentration of 1 ng/µl for quantification of parasitemia by qPCR. We used an Mx3005 real-time PCR instrument (Stratagene, USA) with SYBR-Green based detection (Platinum SYBR Green qPCR SuperMix-UDG; Invitrogen, USA) according to the manufacturer’s protocol. Given that DNA content varies around the target 1 ng/µl across samples, a first reaction was carried out with the host-specific primers SFSR/3Fb and SFSR/3Rb (Table 2)  to accurately measure the content of host DNA in the samples. For quantification of host DNA, each plate contained a standard curve based on a two-fold serial dilution of a non-infected sample with a starting DNA concentration of 4 ng/µl. In order to estimate parasitemia separately for Haemoproteus and Plasmodium, we used previously published Plasmodium-exclusive primers PQR/PQF  and designed a pair of Haemoproteus-exclusive primers Cytb734F/Cytb857R (Table 2). The proposed genus-specific amplification of the primers was checked against an alignment containing sequences of all Plasmodium and Haemoproteus lineages commonly found in house sparrows . All qPCR reactions started with a pre-incubation at 50 °C (2 min) to remove potential PCR contaminants by uracil-n-glycosylase digestion followed by a denaturation at 95ºC (2 min). The temperature profile consisted at 43 cycles of 94 °C for 30 s, 52–57 °C (Table 2) for 45 s and 72 °C for 45 s, followed by a melting analysis between 48 and 95 °C. All samples were run in duplicates and DNA copies were scored as the average across the two wells. For quantification of parasites, the Haemoproteus and Plasmodium reference samples (see above) were included on each plate to adjust for inter-plate variation. Finally, six negative controls were included per plate and the results were only accepted when the negative controls yielded no specific amplification. At the end of each run, the amplification curves were inspected to obtain Ct values (the number of cycles when the florescence signal reached the automatically generated threshold line) for each sample and the melting curves were checked to detect false positive (i.e. non-specific amplifications). The parasite quantity of each sample (x) was calculated relative the reference sample (r) using the ΔCt method (2Ctr − Ctx) and converted to relative parasitemia by multiplying the ΔCt values with the microscopic estimates of parasitemia of the reference samples. These relative parasitemia values were then corrected for variation in the amount of host DNA, by dividing the values of the qPCR estimates with the host DNA concentration. Finally, the estimates were transformed to logarithm in base 10 (log10) for statistical analyses.
To test for interactions between P. relictum and H. passeris, we used a similar statistical approach as Lello et al. . Thus, to test for effects of P. relictum on H. passeris infection status, we performed a logistic regression with presence/absence of H. passeris in blood as dependent variable, and P. relictum parasitemia (including samples with zero parasitaemia) as predictor. To test for effects of P. relictum on H. passeris parasitemia, we performed a glm with H. passeris parasitemia (only samples with > 0 parasitemia) as dependent variable, and P. relictum parasitemia (including samples with 0 parasitemia) as predictor. Corresponding analyses were performed to investigate the effect of H. passeris on P. relictum. All analyses were done separately for adults and juveniles since several previous studies have shown that both infection status and parasitemia differs between age classes for haemosporidian parasites . For infection status in adults we performed generalized linear mixed models [proc glimmix in SAS 9.4 (SAS Institute, NC, USA); method = Laplace; dependent variable: infection status of either H. passeris or P. relictum (presence/absence); fixed factors: year, month and their interactions; covariate: parasitemia of either H. passeris (in the analysis of P. relictum infection status) or P. relictum (in the analysis of H. passeris infection status); random factor: individual]. For parasitemia in adults we performed general linear mixed models (proc mixed; dependent variable: parasitemia of either H. passeris or P. relictum; fixed factors: year, month and their interactions; covariate: parasitemia of either H. passeris or P. relictum; random factor: individual). For juveniles, we performed similar analyses but with week as factor instead of year and month (since juveniles were only sampled during one year). Finally, differences in parasitemia were also tested in adults and juveniles, combined for week 30–43 (July to October) 2016, where we had data from both age classes. We again performed general linear mixed models (proc mixed; dependent variable: parasitemia of either H. passeris or P. relictum; fixed factors: week, age and their interaction; random factor: individual). Non-significant terms were deleted in a stepwise manner (interactions first) at P > 0.1. P-values for fixed effects were determined by F tests (type 3). Denominator degrees of freedom were determined by Satterthwaite approximation. Plots were made with the R package ggplot2 (v. 2.1.0) .
Availability of data and materials
All data generated or analysed during this study are included in this published article [and its additional files], see Additional file 1 and Additional file 2. Note that the chromatograms from Sanger sequencing (Additional file 1) only were used for confirming presence/absence of Haemosporiadian parasites (H. passeris and P. relictum in particular) by comparisons with the Malavi database . The accession numbers to the three dominant malaria parasites found are SGS1 - AF495571, PADOM05 - HM146898 and PAGRI02 - JX196865.
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Open access funding provided by Lund University. Funding was provided by the Junta de Extremadura (PO17024, Post-Doc grant (LGL); FEDER / Consejería de Economía, Ciencia y Agenda Digital, reference IB20089 (LGL and AM) and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant 679799 (HW)).
Ethics approval and consent to participate
The experiment and methodology were evaluated and approved by institutional Commission of Bioethics of University of Extremadura (CBUE 49/2011 and 72/2016) and by Junta de Extremadura (CN27/15/ACA and CN15/2332). All the experiments were performed in accordance with relevant guidelines and regulations of Spain. All methods are reported in accordance with ARRIVE guidelines (https://arriveguidelines.org) for the reporting of animal experiments.
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Identification of Haemosporidian parasites (Haemoproteus passeris (PADOM05), Plasmodium relictum (SGS1, GRW11), and Plasmodium spp (PAGRI02)) in house sparrows by Sanger sequencing. Haemosporidian parasites in bird blood in both adult and juvenile house sparrows identified by Sanger sequencing (Sanger sequencing identified three main parasite species: Haemoproteus passeris (PADOM05), Plasmodium relictum (SGS1, GRW11), and Plasmodium spp (PAGRI02)) . Every individual was sampled repeatedly over the season(s) (Year and Date).
Quantification of Haemosporidian parasites (Haemoproteus spp and Plasmodium spp) in house sparrows using qPCR. Haemosporidian parasites in bird blood in both adult and juvenile house sparrows quantified by qPCR (Haemoproteus spp (HQ) and Plasmodium spp (PQ)). Every individual (1-35) was sampled repeatedlyover the season(s) (Year, Week and Date). The adult individuals 2 and 20 only had single infections, three juveniles were not infected and one juvenile was only sampled twice, and these six individuals were excluded from further analyses.
Seasonal changes in infection status and parasitemia in adult house sparrows, nine individuals. Changes in infection status (% blood-positive individuals) and infection intensity(log10 parasitemia, box plot where the bottom and top of the box indicates the first and third quartiles, the centralline corresponds to the median, the whiskers represent the highest and lowest value within 1.5 * the interquartile range respectively) for H. passeris (green bars) and P. relictum (blue bars) in adult house sparrows, from February 2016 to September 2017, when studied in nine individuals over an 18-month period (note a lower sample size at the last sampling point in September 2017 (N=6)).
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Garcia-Longoria, L., Magallanes, S., Huang, X. et al. Reciprocal positive effects on parasitemia between coinfecting haemosporidian parasites in house sparrows. BMC Ecol Evo 22, 73 (2022). https://doi.org/10.1186/s12862-022-02026-5
- House sparrow