Nekaris KAI, Bearder SK: The strepsirrhine primates of Asia and Mainland Africa: diversity shrouded in darkness. Primates in Perspective. Edited by: Campbell C, Fuentes A, Mackinnon KC, Panger M. 2007, Oxford: Oxford University Press, 24-45.
Google Scholar
Nekaris KAI, Bearder SK: The strepsirrhine primates of Asia and Mainland Africa: diversity shrouded in darkness. Primates in Perspective. Edited by: Campbell C, Fuentes A, Mackinnon KC, Bearder SK, Stumpf RM. 2010, Oxford: Oxford University Press, 24-45. 2
Google Scholar
Kingdon J: The Kingdon Field Guide to African Mammals. 1997, San Diego: Academic Press
Google Scholar
Charles-Dominique P: Ecology and Behaviour of Nocturnal Primates: Prosimians of Equatorial West Africa. 1977, New York: Columbia University Press, transl. Martin RD
Google Scholar
Nash L, Harcourt C: Social organization of galagos in Kenyan coastal forests: II. Galago garnettii. Am J Primatol. 1986, 369: 357-369.
Google Scholar
Müller AE, Thalmann U: Origin and evolution of primate social organisation: a reconstruction. Biol Rev Camb Philos Soc. 2000, 75: 405-435. 10.1017/S0006323100005533.
PubMed
Google Scholar
Harcourt C, Nash L: Social organization of galagos in Kenyan coastal forests: I. Galago zanzibaricus. Am J Primatol. 1986, 355: 339-355.
Google Scholar
Masters JC, Bragg NP: Morphological correlates of speciation in bush babies. Int J Primatol. 2000, 21: 793-813. 10.1023/A:1005590524932.
Google Scholar
Marshall JTJ, Marshall EER: Gibbons and their territorial songs. Science. 1976, 193: 235-237. 10.1126/science.193.4249.235.
PubMed
Google Scholar
Mitani JC: Species discrimination of male song in gibbons. Am J Primatol. 1987, 13: 413-423. 10.1002/ajp.1350130406.
Google Scholar
Thinh VN, Hallam C, Roos C, Hammerschmidt K: Concordance between vocal and genetic diversity in crested gibbons. BMC Evol Biol. 2011, 11: 36-10.1186/1471-2148-11-36.
PubMed
PubMed Central
Google Scholar
Cleveland J, Snowdon C: The complex vocal repertoire of the adult cotton-top tamarin (Saguinus oedipus oedipus). Z Tierpsychol. 1982, 270: 231-270.
Google Scholar
Masataka N: Interspecific and intraspecific responses to some species-specific vocalizations in marmosets, tamarins, and Goeldi’s monkeys. Current perspectives in primates social dynamics. Edited by: King F. 1986, New York: Van Nostrand Reinhold, 368-377.
Google Scholar
Nietsch A: Duet vocalizations among different populations of Sulawesi tarsiers. Int J Primatol. 1999, 20: 567-583. 10.1023/A:1020342807709.
Google Scholar
Gautier J-P: A redrawn phylogeny of guenons based upon their calls-biogeographical implications. Bioacoustics. 1989, 2: 11-21. 10.1080/09524622.1989.9753110.
Google Scholar
Struhsaker TT: Phylogenetic implications of some vocalizations of Cercopithecus monkeys. Old World Monkeys. Edited by: Academic P, Napier J, Napier P. 1970, London: Academic Press, New York, 365-444.
Google Scholar
Oates J, Trocco T: Taxonomy and phylogeny of black and white colobus monkeys. Folia Primatol. 1983, 40: 83-113. 10.1159/000156092.
PubMed
Google Scholar
Meyer D, Hodges JK, Rinaldi D, Wijaya A, Roos C, Hammerschmidt K: Acoustic structure of male loud-calls support molecular phylogeny of Sumatran and Javanese leaf monkeys (genus Presbytis). BMC Evol Biol. 2012, 12: 16-10.1186/1471-2148-12-16.
PubMed
PubMed Central
Google Scholar
Schwarz E: On the African long-tailed lemurs or galagos. Ann Mag Nat Hist. 1931, 10: 41-66.
Google Scholar
Grubb P, Butynski TM, Oates JF, Bearder SK, Disotell TR, Groves CP, Struhsaker TT: Assessment of the diversity of African primates. Int J Primatol. 2003, 24: 1301-1357.
Google Scholar
Nash L, Bearder S, Olson T: Synopsis of Galago species characteristics. Int J Primatol. 1989, 10: 57-80. 10.1007/BF02735704.
Google Scholar
Groves CP: A Theory of Human and Primate Evolution. 1989, Oxford, UK: Clarendon Press
Google Scholar
Groves CP: Primate Taxonomy. 2001, Washington, DC: Smithsonian Institution Press
Google Scholar
DelPero M, Masters JC, Zuccon D, Cervella P, Crovella S, Ardito G: Mitochondrial sequences as indicators of genetic classification in bush babies. Int J Primatol. 2000, 21: 889-904. 10.1023/A:1005502927658.
Google Scholar
Roos C, Schmitz J, Zischler H: Primate jumping genes elucidate strepsirrhine phylogeny. Proc Natl Acad Sci U S A. 2004, 101: 10650-10.1073/pnas.0403852101.
PubMed
PubMed Central
Google Scholar
Masters JC, Boniotto M, Crovella S, Roos C, Pozzi L, Delpero M: Phylogenetic relationships among the Lorisoidea as indicated by craniodental morphology and mitochondrial sequence data. Am J Primatol. 2007, 69: 6-15. 10.1002/ajp.20322.
PubMed
Google Scholar
Fabre PH, Rodrigues A, Douzery EJ: Patterns of macroevolution among primates inferred from a supermatrix of mitochondrial and nuclear DNA. Mol Phylogenet Evol. 2009, 53: 808-825. 10.1016/j.ympev.2009.08.004.
PubMed
Google Scholar
Springer MS, Meredith RW, Gatesy J, Emerling C, Park J, Rabosky DL, Stadler T, Steiner C, Ryder O, Janečka JE, Fisher C, Murphy WJ: Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS One. 2012, 7: e49521-10.1371/journal.pone.0049521.
PubMed
PubMed Central
Google Scholar
Bayes M: A molecular phylogenetic study of the galagos, strepsirrhine primates and archontan mammals. 1998, Oxford: Oxford Brookes University
Google Scholar
Stiner E, Turmelle A: Galagid taxonomy and the placement of the needle-clawed galago (Euoticus): based on cytochrome b, 12S and 16S partial sequences. Afr Primates. 2003, 6 (1&2): 3-10.
Google Scholar
Chatterjee HJ, Ho SYW, Barnes I, Groves C: Estimating the phylogeny and divergence times of primates using a supermatrix approach. BMC Evol Biol. 2009, 9: 259-10.1186/1471-2148-9-259.
PubMed
PubMed Central
Google Scholar
Wesselman H: The Omo Micromammals: Systematics and Paleo-Ecology of Early Man Sites from Ethiopia. Contributions to Vertebrate Evolution. 1984, Basel, Switzerland: Karger, 7: 165-
Google Scholar
Simpson G: Family: Galagidae. Olduvai Gorge 1951–61 Vol 1 A Preliminary Report on the Geology and Fauna. Edited by: Leakey L. 1965, Cambridge, UK: Cambridge University Press, 15-16.
Google Scholar
Pickford M, Wanas H, Soliman H: Indications for a humid climate in the Western Desert of Egypt 11–10 Myr ago: evidence from Galagidae (Primates, Mammalia). Comptes Rendus Palevol. 2006, 5: 935-943. 10.1016/j.crpv.2006.09.001.
Google Scholar
Pickford M, Senut B: The geological and faunal context of Late Miocene hominid remains from Lukeino, Kenya. Comptes Rendus l’Académie des Sci - Ser IIA. Earth Planet Sci. 2001, 332: 145-152.
Google Scholar
Pickford M, Mein P: Early Middle Miocene mammals from Moroto II, Uganda. Beiträge zur Paläontologie. 2006, 30: 361-386.
Google Scholar
Harrison T: Later Tertiary Lorisiformes. Cenozoic Mammals of Africa. Edited by: Werdelin L, Sanders W. 2010, Berkeley, CA: University of California Press, 333-349.
Google Scholar
Harrison T: Galagidae (Lorisoidea, Primates). Paleontology and Geology of Laetoli: Human Evolution in Context. Volume 2: Fossil Hominins and the Associated Fauna. Edited by: Harrison T. 2011, Dordrecht: Springer Netherlands, 75-81.
Google Scholar
Seiffert ER, Simons EL, Attia Y: Fossil evidence for an ancient divergence of lorises and galagos. Nature. 2003, 422: 421-424. 10.1038/nature01489.
PubMed
Google Scholar
Seiffert ER, Simons EL, Ryan TM, Attia Y: Additional remains of Wadilemur elegans, a primitive stem galagid from the late Eocene of Egypt. Proc Natl Acad Sci U S A. 2005, 102: 11396-10.1073/pnas.0505310102.
PubMed
PubMed Central
Google Scholar
Seiffert ER: Evolution and extinction of Afro-Arabian primates near the Eocene-Oligocene boundary. Folia Primatol. 2007, 78: 314-327. 10.1159/000105147.
PubMed
Google Scholar
Godinot M: Paleogene Prosimians. Cenozoic Mammals of Africa. Edited by: Werdelin L, Sanders W. 2010, Berkeley, CA: University of California Press, (March 2013):319–331
Google Scholar
MacInnes D: Notes on the East African primates. J East Africa Uganda Nat Hist Soc. 1943, 39: 521-530.
Google Scholar
Simpson G: The Tertiary lorisiform primates of Africa. Bull Museum Comp Zool. 1967, 136: 39-62.
Google Scholar
Le Gros Clark W, Thomas D: The Miocene Lemuroids of East Africa. Fossil Mammals of Africa 5. 1952, London: British Museum (Natural History), 20-
Google Scholar
Rasmussen DT, Nekaris K: Evolutionary History of Lorisiform Primates. Folia Primatol. 1998, 69 (suppl 1): 250-285.
PubMed
Google Scholar
Seiffert ER: Early evolution and biogeography of lorisiform strepsirrhines. Am J Primatol. 2007, 69: 27-35. 10.1002/ajp.20324.
PubMed
Google Scholar
Jameson NM, Hou Z-C, Sterner KN, Weckle A, Goodman M, Steiper ME, Wildman DE: Genomic data reject the hypothesis of a prosimian primate clade. J Hum Evol. 2011, 61: 295-305. 10.1016/j.jhevol.2011.04.004.
PubMed
Google Scholar
Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, Moreira MA, Kessing B, Pontius J, Roelke M, Rumpler Y, Schneider MPC, Silva A, O’Brien SJ, Pecon-Slattery J: A molecular phylogeny of living primates. PLoS Genet. 2011, 7: e1001342-10.1371/journal.pgen.1001342.
PubMed
PubMed Central
Google Scholar
Degnan JH, Rosenberg NA: Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol. 2009, 24: 332-340. 10.1016/j.tree.2009.01.009.
PubMed
Google Scholar
Degnan JH, Rosenberg NA: Discordance of species trees with their most likely gene trees. PLoS Genet. 2006, 2: e68-10.1371/journal.pgen.0020068.
PubMed
PubMed Central
Google Scholar
Edwards SV: Is a new and general theory of molecular systematics emerging?. Evolution. 2009, 63: 1-19. 10.1111/j.1558-5646.2008.00549.x.
PubMed
Google Scholar
Kubatko LS, Degnan JH: Inconsistency of phylogenetic estimates from concatenated data under coalescence. Syst Biol. 2007, 56: 17-24. 10.1080/10635150601146041.
PubMed
Google Scholar
Leaché AD, Rannala B: The accuracy of species tree estimation under simulation: a comparison of methods. Syst Biol. 2011, 60: 126-137. 10.1093/sysbio/syq073.
PubMed
Google Scholar
Heled J, Drummond AJ: Bayesian inference of species trees from multilocus data. Mol Biol Evol. 2010, 27: 570-580. 10.1093/molbev/msp274.
PubMed
PubMed Central
Google Scholar
Song S, Liu L, Edwards SV, Wu S: Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model. Proc Natl Acad Sci U S A. 2012, 109: 14942-14947. 10.1073/pnas.1211733109.
PubMed
PubMed Central
Google Scholar
Gatesy J, Springer MS: Concatenation versus coalescence versus “concatalescence”. Proc Natl Acad Sci U S A. 2013, 110: E1179-10.1073/pnas.1221121110.
PubMed
PubMed Central
Google Scholar
Maddison WP, Knowles LL: Inferring phylogeny despite incomplete lineage sorting. Syst Biol. 2006, 55: 21-10.1080/10635150500354928.
PubMed
Google Scholar
Edwards SV, Liu L, Pearl DK: High-resolution species trees without concatenation. Proc Natl Acad Sci. 2007, 104: 5936-5941. 10.1073/pnas.0607004104.
PubMed
PubMed Central
Google Scholar
Weisrock DW, Smith SD, Chan LM, Biebouw K, Kappeler PM, Yoder AD: Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Mol Biol Evol. 2012, 29: 1615-1630. 10.1093/molbev/mss008.
PubMed
PubMed Central
Google Scholar
Perez SI, Klaczko J, Dos Reis SF: Species tree estimation for a deep phylogenetic divergence in the New World monkeys (Primates: Platyrrhini). Mol Phylogenet Evol. 2012, 65: 621-630. 10.1016/j.ympev.2012.07.014.
PubMed
Google Scholar
Pozzi L, Bergey CM, Burrell AS: The use (and misuse) of phylogenetic trees in comparative behavioral analyses. Int J Primatol. 2014, 35: 32-54. 10.1007/s10764-013-9701-0.
Google Scholar
Thiele D, Razafimahatratra E, Hapke A: Discrepant partitioning of genetic diversity in mouse lemurs and dwarf lemurs - Biological reality or taxonomic bias?. Mol Phylogenet Evol. 2013, 69: 593-609. 10.1016/j.ympev.2013.07.019.
PubMed
Google Scholar
Guevara EE, Steiper ME: Molecular phylogenetic analysis of the Papionina using concatenation and species tree methods. J Hum Evol. 2014, 66: 18-28.
PubMed
Google Scholar
Ting N, Sterner KN: Primate molecular phylogenetics in a genomic era. Mol Phylogenet Evol. 2013, 66: 565-568. 10.1016/j.ympev.2012.08.021.
PubMed
Google Scholar
Bouckaert R: DensiTree: making sense of sets of phylogenetic trees. Bioinformatics. 2010, 26: 1372-1373. 10.1093/bioinformatics/btq110.
PubMed
Google Scholar
Masters JC, Anthony NM, de Wit M, Mitchell A: Reconstructing the evolutionary history of the Lorisidae using morphological, molecular, and geological data. Am J Phys Anthropol. 2005, 127: 465-480. 10.1002/ajpa.20149.
PubMed
Google Scholar
Yoder AD, Irwin JA, Payseur BA: Failure of the ILD to determine data combinability for slow loris phylogeny. Syst Biol. 2001, 50: 408-424. 10.1080/106351501300318003.
PubMed
Google Scholar
Cartmill M: Strepsirhine basicranial structures and the affinities of the Cheirogaleidae. Phylogeny of the primates: a multidisciplinary approach. Edited by: Luckett W, Szalay F. 1975, New York: Plenum Press, 313-354.
Google Scholar
Ankel-Simons F: A Survey of Living Primates and Their Anatomy. 1983, New York: Macmillan Press
Google Scholar
Schwartz JH, Tattersall I: Evolutionary relationships of living lemurs and lorises (Mammalia, Primates) and their potential affinities with European Adapidae. Anthr Pap Am Mus Nat Hist. 1985, 60: 1-100.
Google Scholar
Masters JC, Brothers DJ: Lack of congruence between morphological and molecular data in reconstructing the phylogeny of the Galagonidae. Am J Phys Anthropol. 2002, 117: 79-93. 10.1002/ajpa.10001.
PubMed
Google Scholar
Schwartz JH: Pseudopotto martini: a new genus and species of extant lorisiform primate. Anthropol Pap Am Mus Nat Hist. 1996, 78: 1-14.
Google Scholar
Goodman M, Porter C, Czelusniak J, Page SL, Schneider H, Shoshani J, Gunnell G, Groves CP: Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence. Mol Phylogenet Evol. 1998, 9: 585-598. 10.1006/mpev.1998.0495.
PubMed
Google Scholar
Matsui A, Rakotondraparany F, Munechika I, Hasegawa M, Horai S: Molecular phylogeny and evolution of prosimians based on complete sequences of mitochondrial DNAs. Gene. 2009, 441: 53-66. 10.1016/j.gene.2008.08.024.
PubMed
Google Scholar
Pozzi L, Hodgson JA, Burrell AS, Sterner KN, Raaum RL, Disotella TR: Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes. Mol Phylogenet Evol. 2014, 75: 165-183.
PubMed
PubMed Central
Google Scholar
Dene H, Goodman M, Prychodko W, Moore G: Immunodiffusion systematics of the primates: The Strepsirhini. Folia Primatol. 1976, 25: 35-61. 10.1159/000155706.
PubMed
Google Scholar
Finstermeier K, Zinner D, Brameier M, Meyer M, Kreuz E, Hofreiter M, Roos C: A mitogenomic phylogeny of living primates. PLoS One. 2013, 8: e69504-10.1371/journal.pone.0069504.
PubMed
PubMed Central
Google Scholar
Hillis DM: SINEs of the perfect character. Proc Natl Acad Sci. 1999, 96: 9979-10.1073/pnas.96.18.9979.
PubMed
PubMed Central
Google Scholar
Shedlock AM, Okada N: SINE insertions: powerful tools for molecular systematics. Bioessays. 2000, 22: 148-160. 10.1002/(SICI)1521-1878(200002)22:2<148::AID-BIES6>3.0.CO;2-Z.
PubMed
Google Scholar
Ray DA: SINEs of progress: Mobile element applications to molecular ecology. Mol Ecol. 2007, 16: 19-33.
PubMed
Google Scholar
Ray D, Xing J, Salem A-H, Batzer M: SINEs of a nearly perfect character. Syst Biol. 2006, 55: 928-935. 10.1080/10635150600865419.
PubMed
Google Scholar
Walker A: Post-cranial remains of the Miocene Lorisidae of East Africa. Am J Phys Anthropol. 1970, 33: 249-262. 10.1002/ajpa.1330330211.
PubMed
Google Scholar
Olson T: Studies on aspects of the morphology of the genus Otolemur Coquerel, 1859. 1979, London: University of London
Google Scholar
Smith A: An epitome of African zoology. South African Q J 2nd ser. 1833, 1: 16-32. 49–51 [Order Quadrumana]
Google Scholar
Kingdon J: East African Mammals. 1971, London: Academic Press, 1:
Google Scholar
Wood B, Collard M: The human genus. Science. 1999, 284: 65-71. 10.1126/science.284.5411.65.
PubMed
Google Scholar
Bearder SK, Honess PE, Ambrose L: Species diversity among galagos with special reference to mate recognition. Creature of the dark: the nocturnal prosimians. Edited by: Alterman L, Doyle G, Izard M. 1995, New York: Plenum Publishing Co, 331-352.
Google Scholar
Zimmermann E: Differentiation of vocalizations in bushbabies (Galaginae, Prosimiae, Primates) and the significance for assessing phylogenetic relationships. J Zool Syst Evol Res. 1990, 28: 217-239.
Google Scholar
Zachos J, Pagani M, Sloan L, Thomas E, Billups K: Trends, rhythms, and aberrations in global climate 65 Ma to present. Science. 2001, 292: 686-693. 10.1126/science.1059412.
PubMed
Google Scholar
Jacobs B, Tabor N, Feseha M: Oligocene terrestrial strata of northwestern Ethiopia: a preliminary report on paleoenvironments and paleontology. Palaeontol Electron. 2005, 8: 1-19.
Google Scholar
Kedves M: Présence de types sporomorphes importants dans les sédiments pré-quaternaires Egyptiens. Acta Bot Acad Sci Hungaricae. 1971, 17: 371-378.
Google Scholar
Lovett JC: Eastern Arc moist forest flora. Biogeography and ecology of the rain forests of eastern Africa. Edited by: Lovett JC, Wasser S. 1993, Cambridge, UK London: Cambridge University Press, 33-57.
Google Scholar
Burgess ND, Butynski TM, Cordeiro N, Doggart N, Fjeldsa J, Howell KM, Kilahama F, Loader S, Lovett J, Mbilinyi B, Menegon M, Moyer D, Nashanda E, Perkin A, Rovero F, Stanley WT, Stuart SN: The biological importance of the Eastern Arc Mountains of Tanzania and Kenya. Biol Conserv. 2007, 134: 209-231. 10.1016/j.biocon.2006.08.015.
Google Scholar
McCrossin ML: New species of bushbaby from the middle Miocene of Maboko Island, Kenya. Am J Phys Anthropol. 1992, 89: 215-233. 10.1002/ajpa.1330890207.
PubMed
Google Scholar
Phillips EM, Walker A: Fossil lorisoids. The Primate Fossil Record. Edited by: Hartwig WC. 2002, Cambridge, UK: Cambridge University Press, 83-95.
Google Scholar
Butynski T, de Jong YA, Perkin A, Bearder S, Honess PE: Taxonomy, distribution, and conservation status of three species of dwarf galagos (Galagoides) in Eastern Africa. Primate Conserv. 2006, 21: 63-79.
Google Scholar
Zimmermann E, Bearder SK, Doyle GA, Andersson AB: Variations in vocal patterns of Senegal and South African lesser bushbabies and their implications for taxonomic relationships. Folia Primatol. 1988, 51: 87-105. 10.1159/000156360.
PubMed
Google Scholar
Masters JC: Loud calls of Galago crassicaudatus and G. garnettii and their relation to habitat structure. Primates. 1991, 32: 153-167. 10.1007/BF02381173.
Google Scholar
Ambrose L: Three acoustic forms of Allen’s galagos (Primates; Galagonidae) in the Central African region. Primates. 2003, 44: 25-39.
PubMed
Google Scholar
Masters JC: Speciation in the lesser galagos. Folia Primatol. 1998, 69 (Suppl. 1): 357-370. 10.1159/000052724.
PubMed
Google Scholar
Edgar RC: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32: 1792-1797. 10.1093/nar/gkh340.
PubMed
PubMed Central
Google Scholar
Talavera G, Castresana J: Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 2007, 56: 564-577. 10.1080/10635150701472164.
PubMed
Google Scholar
Castresana J: Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, 17 (4): 540-552. 10.1093/oxfordjournals.molbev.a026334.
PubMed
Google Scholar
Stamatakis A, Ludwig T, Meier H: RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics. 2005, 21: 456-463. 10.1093/bioinformatics/bti191.
PubMed
Google Scholar
Stamatakis A: RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006, 22: 2688-2690. 10.1093/bioinformatics/btl446.
PubMed
Google Scholar
Stamatakis A, Hoover P, Rougemont J: A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol. 2008, 57: 758-771. 10.1080/10635150802429642.
PubMed
Google Scholar
Hillis D, Bull J: An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol. 1993, 42: 182-192. 10.1093/sysbio/42.2.182.
Google Scholar
Wilcox TP, Zwickl DJ, Heath TA, Hillis DM: Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol Phylogenet Evol. 2002, 25: 361-371. 10.1016/S1055-7903(02)00244-0.
PubMed
Google Scholar
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP: MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012, 61: 539-542. 10.1093/sysbio/sys029.
PubMed
PubMed Central
Google Scholar
Nylander JAA: MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. 2004, Available from: http://www.abc.se/~nylander/mrmodeltest2/mrmodeltest2.html
Google Scholar
Alfaro ME: Bayes or Bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol. 2003, 20: 255-266. 10.1093/molbev/msg028.
PubMed
Google Scholar
Erixon P, Svennblad B, Britton T, Oxelman B: Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst Biol. 2003, 52: 665-673. 10.1080/10635150390235485.
PubMed
Google Scholar
Huelsenbeck J, Rannala B: Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst Biol. 2004, 53: 904-913. 10.1080/10635150490522629.
PubMed
Google Scholar
Rambaut A, Drummond AJ: Tracer v1.5 [Online]. 2009, Available from http://tree.bio.ed.ac.uk/software/tracer/
Google Scholar
Nylander J, Wilgenbusch JC, Warren DL, Swofford DL: AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics. 2008, 24: 581-583. 10.1093/bioinformatics/btm388.
PubMed
Google Scholar
Liu L: BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics. 2008, 24: 2542-2543. 10.1093/bioinformatics/btn484.
PubMed
Google Scholar
Huelsenbeck JPP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17: 754-755. 10.1093/bioinformatics/17.8.754.
PubMed
Google Scholar
Townsend TM, Mulcahy DG, Noonan BP, Sites JW: Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation. Mol Phylogenet Evol. 2011, 61: 363-380. 10.1016/j.ympev.2011.07.008.
PubMed
Google Scholar
Thomson RC, Shedlock AM, Edwards SV, Shaffer HB: Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles. Mol Phylogenet Evol. 2008, 49: 514-525. 10.1016/j.ympev.2008.08.006.
PubMed
Google Scholar
Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
PubMed
PubMed Central
Google Scholar
Drummond AJ, Suchard MA, Xie D, Rambaut A: Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012, 29: 1969-1973. 10.1093/molbev/mss075.
PubMed
PubMed Central
Google Scholar
Gernhard T: The conditioned reconstructed process. J Theor Biol. 2008, 253: 769-778. 10.1016/j.jtbi.2008.04.005.
PubMed
Google Scholar
Hodgson JA, Sterner KN, Matthews LJ, Burrell AS, Rachana AJ, Raaum RL, Stewart C-B, Disotell TR: Successive radiations, not stasis, in the South American primate fauna. Proc Natl Acad Sci. 2009, 106: 5534-5539. 10.1073/pnas.0810346106.
PubMed
PubMed Central
Google Scholar
Raaum RL, Sterner KN, Noviello CM, Stewart C-B, Disotell TR: Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence. J Hum Evol. 2005, 48: 237-257. 10.1016/j.jhevol.2004.11.007.
PubMed
Google Scholar
Steiper ME, Young NM: Timing primate evolution: Lessons from the discordance between molecular and paleontological estimates. Evol Anthropol Issues, News, Rev. 2008, 17: 179-188. 10.1002/evan.20177.
Google Scholar
Chiou KL, Pozzi L, Lynch Alfaro JW, Di Fiore A: Pleistocene diversification of living squirrel monkeys (Saimiri spp.) inferred from complete mitochondrial genome sequences. Mol Phylogenet Evol. 2011, 59: 736-745. 10.1016/j.ympev.2011.03.025.
PubMed
Google Scholar
Wilkinson RD, Steiper ME, Soligo C, Martin RD, Yang Z, Tavaré S: Dating primate divergences through an integrated analysis of palaeontological and molecular data. Syst Biol. 2011, 60: 16-31. 10.1093/sysbio/syq054.
PubMed
PubMed Central
Google Scholar
Drummond AJ, Ho SYW, Phillips MJ, Rambaut A: Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4: e88-10.1371/journal.pbio.0040088.
PubMed
PubMed Central
Google Scholar
Hedges SB, Kumar S: Precision of molecular time estimates. Trends Genet. 2004, 20: 242-247. 10.1016/j.tig.2004.03.004.
PubMed
Google Scholar
Ho SYW: Calibrating molecular estimates of substitution rates and divergence times in birds. J Avian Biol. 2007, 38: 409-414. 10.1111/j.0908-8857.2007.04168.x.
Google Scholar
Ho SYW, Phillips MJ: Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst Biol. 2009, 58: 367-380. 10.1093/sysbio/syp035.
PubMed
Google Scholar
Benton MJ, Donoghue PCJ: Paleontological evidence to date the tree of life. Mol Biol Evol. 2007, 24: 26-53.
PubMed
Google Scholar
Donoghue PCJ, Benton MJ: Rocks and clocks: calibrating the Tree of Life using fossils and molecules. Trends Ecol Evol. 2007, 22: 424-431. 10.1016/j.tree.2007.05.005.
PubMed
Google Scholar
Pozzi L, Hodgson JA, Burrell AS, Disotell TR: The stem catarrhine Saadanius does not inform the timing of the origin of crown catarrhines. J Hum Evol. 2011, 61: 209-210. 10.1016/j.jhevol.2011.02.008.
PubMed
Google Scholar
Haile-Selassie Y: Late Miocene hominids from the middle Awash, Ethiopia. Nature. 2001, 412: 178-181. 10.1038/35084063.
PubMed
Google Scholar
Senut B, Pickford M, Gommery D, Mein P, Cheboi K, Coppens Y: First hominid from the Miocene (Lukeino Formation, Kenya). Comptes Rendus de l’Académie des Sciences - Series IIA. Earth Planetary Sci. 2001, 332: 137-144.
Google Scholar
Vignaud P, Duringer P, Mackaye HT, Likius A, Blondel C, Boisserie J-R, De Bonis L, Eisenmann V, Etienne M-E, Geraads D, Guy F, Lehmann T, Lihoreau F, Lopez-Martinez N, Mourer-Chauviré C, Otero O, Rage J-C, Schuster M, Viriot L, Zazzo A, Brunet M: Geology and palaeontology of the Upper Miocene Toros-Menalla hominid locality, Chad. Nature. 2002, 418: 152-155. 10.1038/nature00880.
PubMed
Google Scholar
Brunet M, Guy F, Pilbeam D, Mackaye HT, Likius A, Ahounta D, Beauvilain A, Blondel C, Bocherens H, Boisserie J-R, De Bonis L, Coppens Y, Dejax J, Denys C, Duringer P, Eisenmann V, Fanone G, Fronty P, Geraads D, Lehmann T, Lihoreau F, Louchart A, Mahamat A, Merceron G, Mouchelin G, Otero O, Pelaez Campomanes P, Ponce De Leon M, Rage J-C, Sapanet M, et al: A new hominid from the Upper Miocene of Chad, Central Africa. Nature. 2002, 418: 145-151. 10.1038/nature00879.
PubMed
Google Scholar
Kelley J: The hominoid radiation in Asia. The Primate Fossil Record. Edited by: Hartwig WC. 2002, Cambridge, UK: Cambridge University Press, 369-384.
Google Scholar
Gebo DL, MacLatchy L, Kityo R, Deino A, Kingston J, Pilbeam D: A hominoid genus from the early Miocene of Uganda. Science. 1997, 276: 401-404. 10.1126/science.276.5311.401.
PubMed
Google Scholar
Pilbeam DR, Walker AC: Fossil monkeys from the Miocene of Napak, Northeast Uganda. Nature. 1968, 220 (5168): 657-660. 10.1038/220657a0.
PubMed
Google Scholar
Benefit BR, McCrossin ML: The Victoriapithecidae, Cercopithecoidea. The Primate Fossil Record. Edited by: Hartwig WC. 2002, Cambridge, UK: Cambridge University Press, 241-253.
Google Scholar
Leakey M: Evolution of Theropithecus in the Turkana Basin. Theropithecus: The Rise and Fall of a Primate Genus. Edited by: Jablonski NG. 1993, Cambridge, UK: Cambridge University Press, 85-123.
Google Scholar
Frost S: African Pliocene and Pleistocene cercopithecid evolution and global climatic change. Hominin Environments in the East African Pliocene: An assessment of the Faunal Evidence. Edited by: Bobe R, Alemseged Z. 2007, New York: Springer, 51-76.
Google Scholar