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Table 1 List of loci used in this study with characteristics and taxon coverage (number of species sampled)

From: A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae)

Locus Length (bp) Taxon coverage Lorisoidea Galagidae Model
Lorisoidea (20) Galagidae (14) VS PIS VS PIS  
ABCA1 674 14 9 104 52 58 22 GTR + I
ADORA3 416 18 12 42 28 17 10 HKY + G
AFF2 510 19 13 43 28 27 17 GTR + I
APP 714 17 13 40 20 20 8 GTR + G
ATXN7 565 19 14 72 47 42 21 SYM + G
AXIN1 951 19 13 67 33 32 12 GTR + I + G
BCOR 789 19 13 69 51 48 34 HKY + I + G
CHRNA1 425 19 13 79 41 38 18 HKY + G
DACH1 630 19 13 114 47 59 18 GTR + G
DCTN2 635 19 13 76 46 47 19 K80 + G
DENND5A 747 20 14 159 80 82 41 HKY + G
ERC2 793 17 11 139 86 60 33 GTR + G
FAM123B 747 19 14 181 79 81 41 SYM + G
FBN1 735 20 14 53 29 23 7 HKY + I
GHR 1295 14 10 164 90 96 33 HKY + G
KCNMA1 656 16 10 46 31 26 15 GTR + I
LRPPRC-171 819 18 13 103 52 45 25 HKY + G
LUC7L 751 19 13 77 42 36 14 HKY + G
NPAS3.2 680 20 14 121 64 73 22 GTR + G
PNOC 351 18 13 57 29 41 15 HKY + G
POLA1 658 20 14 71 37 47 21 GTR + I
RAG2 769 19 13 73 42 50 24 HKY + G
RPGRIP1 713 18 12 85 38 49 11 HKY + G
SGMS1 616 20 14 34 13 17 5 GTR + I
SIM1 670 20 14 42 18 26 12 HKY + I
SMCX 365 18 14 56 21 42 12 HKY + G
ZIC3 574 19 13 40 14 18 2 HKY + G
TOTAL 18248 18.4 (92.0%) 12.8 (91.5%) 2119 1150 1157 511  
  1. Note: VS: Variable Sites.
  2. PIS: Parsimony-Informative Sites.