Sala-Bozano M, Ketmaier V, Mariani S: Contrasting signals from multiple markers illuminate population connectivity in a marine species. Mol Ecol. 2009, 18: 4811-4826. 10.1111/j.1365-294X.2009.04404.x.
Article
CAS
PubMed
Google Scholar
Kelly RP, Palumbi SR: Genetic structure among 50 species of the Northeastern Pacific intertidal community. PLoS One. 2010, 5: e8594-10.1371/journal.pone.0008594.
Article
PubMed
PubMed Central
Google Scholar
Marko PB, Hoffman JM, Emme SA, McGovern TM, Keever CC, Cox LN: The 'Expansion-Contraction' model of pleistocene biogeography: rocky shores suffer a sea change?. Mol Ecol. 2010, 19: 146-169. 10.1111/j.1365-294X.2009.04417.x.
Article
CAS
PubMed
Google Scholar
Wilson AB: Genetic signature of recent glaciation on populations of a near-shore marine fish species (Syngnathus leptorhyncus). Mol Ecol. 2006, 15: 1857-1871. 10.1111/j.1365-294X.2006.02911.x.
Article
CAS
PubMed
Google Scholar
Haig JA, Connolly RM, Hughes JM: Little shrimp left on the shelf: the roles that sea-level change, ocean currents and continental shelf width play in the genetic connectivity of a seagrass-associated species. J Biogeog. 2010, 37: 1570-1583.
Google Scholar
Kaiser TS, Neumann D, Heckel DG, Berendonk TU: Strong genetic differentiation and postglacial origin of populations in the marine midge Clunio marinus (Chironomidae, Diptera). Mol Ecol. 2010, 19: 2845-2857. 10.1111/j.1365-294X.2010.04706.x.
Article
CAS
PubMed
Google Scholar
Maggs CA, Castilho R, Foltz D, Henzler C, Jolly MT, Kelly J, Olsen J, Perez KE, Stam W, Väinölä R, Viard F, Wares J: Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa. Ecology. 2008, 89 (Suppl 11): S108-S122. 10.1890/08-0257.1.
Article
PubMed
Google Scholar
Wang P: Response of Western Pacific marginal seas to glacial cycles: paleoceanographic and sedimentological features. Mar Geol. 1999, 156: 5-39. 10.1016/S0025-3227(98)00172-8.
Article
Google Scholar
Kitamura A, Kimoto K: History of the inflow of the warm Tsushima Current into the Sea of Japan between 3.5 and 0.8 Ma. Paleogeogr Palaeocl Palaeoecol. 2006, 236: 355-366. 10.1016/j.palaeo.2005.11.015.
Article
Google Scholar
McManus JW: Marine speciation, tectonics and sea-level changes in southeast Asia. Proceedings of the Fifth International Coral Reef Congress: 27 May-1. 1985, 4: 133-138. June ; Tahiti
Google Scholar
Benzie JAH: Genetic structure of marine organisms and SE Asian biogeography. Biogeography and Geological Evolution. Edited by: Hall R, Holloway JD. 1998, Leiden, The Netherlands: Backhuys Publishers, 197-209.
Google Scholar
Woodruff DS: Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today's pattern and the future of the remaining refugal-phase biodiversity. Biodiversity Conserv. 2010, 19: 919-941. 10.1007/s10531-010-9783-3.
Article
Google Scholar
Wang M, Zhang X, Yang T, Han Z, Yanagimoto T, Gao T: Genetic diversity in the mtDNA control region and population structure in the Sardinella zunasi Bleeker. Afr J Biotechnol. 2008, 7: 4384-4392.
CAS
Google Scholar
Jamandre BW, Durand JD, Tzeng WN: Phylogeography of the flathead mullet Mugil cephalus in the north-west Pacific as inferred from the mtDNA control region. J Fish Biol. 2009, 75: 393-407. 10.1111/j.1095-8649.2009.02332.x.
Article
CAS
PubMed
Google Scholar
Tang W, Ishimatsu A, Fu C, Yin W, Li G, Chen H, Wu Q, Li B: Cryptic species and historical biogeography of eel gobies (Gobioidei: Odontamblyopus) along the northwestern Pacific coast. Zool Sci. 2010, 27: 8-13. 10.2108/zsj.27.8.
Article
PubMed
Google Scholar
Liu JX, Gao TX, Wu SF, Zhang YP: Pleistocene isolation in the northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Mol Ecol. 2007, 16: 275-288. 10.1111/j.1365-294X.2006.03140.x.
Article
CAS
PubMed
Google Scholar
Ke HM, Lin WW, Kao HW: Genetic diversity and differentiation of grey mullet (Mugil cephalus) in the coastal waters of Taiwan. Zool Sci. 2009, 26: 421-428. 10.2108/zsj.26.421.
Article
CAS
PubMed
Google Scholar
Thomson JM: A bibliography of systematic references to the flathead mullets (Mugilidae). Tech Pap Div Fish Oceanogr, CSIRO. 1964, 16: 1-127.
Google Scholar
Huang CS, Lin JC, Huang JJ: Investigation and surveillance of grey mullet resource. FRI Newsletter. 2005, 9: 1-5.
Google Scholar
Hung CM, Shaw D: The impact of upstream catch and global warming on the grey mullet fishery in Taiwan: a non-cooperative game analysis. Mar Res Econ. 2006, 21: 285-300.
Article
Google Scholar
Liu JY, Brown CL, Yang TB: Population genetic structure and historical demography of grey mullet, Mugil cephalus, along the coast of China, inferred by analysis of the mitochondrial control region. Biochem Syst Ecol. 2009, 37: 556-566. 10.1016/j.bse.2009.09.002.
Article
Google Scholar
Huang CS, Weng CF, Lee SC: Distingishing two types of gray mullet, Mugil cephalus L. (Mugiliformes: Mugilidae), by using glucose-6-phosphate isomerase (GPI) allozymes with special reference to enzyme activities. J Comp Physiol B. 2001, 171: 387-394. 10.1007/s003600100187.
Article
CAS
PubMed
Google Scholar
Liu JY, Lun ZR, Zhang JB, Yang TB: Population genetic structure of striped mullet, Mugil cephalus, along the coast of China, inferred by AFLP fingerprinting. Biochem Syst Ecol. 2009, 37: 266-274. 10.1016/j.bse.2009.04.010.
Article
Google Scholar
Campton DE, Mahmoudi B: Allozyme variation and population structure of striped mullet (Mugil cephalus) in Florida. Copeia. 1991, 91: 485-492. 10.2307/1446596.
Article
Google Scholar
Rocha-Olivares A, Garber NM, Stuck KC: High genetic diversity, large inter-oceanic divergence and historical demography of the striped mullet. J Fish Biol. 2000, 57: 1134-1149. 10.1111/j.1095-8649.2000.tb00476.x.
Article
CAS
Google Scholar
Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN: DNA barcoding Australia's fish species. Phil Trans Roy Soc Lond B Biol Sci. 2005, 360: 1847-1857. 10.1098/rstb.2005.1716.
Article
CAS
Google Scholar
Katoh K, Misazawa K, Kuma KI, Takashi M: MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30: 3059-3066. 10.1093/nar/gkf436.
Article
CAS
PubMed
PubMed Central
Google Scholar
Excoffier L, Laval G, Schneider S: Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online. 2005, 1: 47-50.
CAS
Google Scholar
Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogeny. Bioinformatics. 2001, 17: 754-755. 10.1093/bioinformatics/17.8.754.
Article
CAS
PubMed
Google Scholar
Swofford DL: PAUP*: phylogenetic analysis using parsimony (* and other methods). version 4.0.b10. 2002, Sunderland, MA: Sinauer Associates
Google Scholar
Heras S, Roldán MI, Castro MG: Molecular phylogeny of Mugilidae fishes revised. Rev Fish Biol Fish. 2009, 19: 217-231. 10.1007/s11160-008-9100-3.
Article
Google Scholar
Posada D, Crandall KA: MODELTEST: testing the model of DNA substitution. Bioinformatics. 1998, 14: 817-818. 10.1093/bioinformatics/14.9.817.
Article
CAS
PubMed
Google Scholar
Hillis DM, Bull JJ: An empirical test of bootstrapping as a method for assessing confidence in Phylogenetic analysis. Syst Biol. 1993, 42: 182-192.
Article
Google Scholar
Drummond AJ, Rambaut A: "BEAST: Bayesian evolutionary analysis by sampling trees". BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
Article
PubMed
PubMed Central
Google Scholar
Lessios HA : The great American schism: divergence of marine organisms after the rise of the central American isthmus. Annu Rev Ecol Evol Syst. 2008, 36: 63-91. 10.1146/annurev.ecolsys.38.091206.095815.
Article
Google Scholar
Rambaut A, Drummond AJ: Tracer v1.4. 2007, [http://beast.bio.ed.ac.uk/Tracer]
Google Scholar
Tajima F: Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics. 1989, 123: 585-595.
CAS
PubMed
PubMed Central
Google Scholar
Fu YX: Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 1997, 147: 915-925.
CAS
PubMed
PubMed Central
Google Scholar
Harpending RC: Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum Biol. 1994, 66: 591-600.
CAS
PubMed
Google Scholar
Rocha-Olivares A, Chavez-Gonzalez JP: Molecular identification of dolphinfish species (genus Coryphaena) using multiplex haplotype-specific PCR of mitochondrial DNA. Ichthyol Res. 2008, 55: 389-393. 10.1007/s10228-008-0040-7.
Article
Google Scholar
Durand JD, Diatta AM, Diop K, Trape S: Multiplex 16 S rRNA haplotype-specific PCR, a rapid and convenient method for fish species identification: an application to West African Clupeiform larvae. Mol Ecol Res. 2010, 10: 568-572. 10.1111/j.1755-0998.2009.02776.x.
Article
CAS
Google Scholar
Molecular Ecology Resources Primer Development Consortium et al: Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2010-31 May 2010. Mol Ecol Res. 2010, 10: 1098-1105. 10.1111/j.1755-0998.2010.02898.x.
Article
Google Scholar
Wright S: The genetical structure of populations. Ann Eugenics. 1951, 15: 323-354. 10.1111/j.1469-1809.1949.tb02451.x.
Article
CAS
Google Scholar
Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F: GENETIX: logiciel sous Windows TM pour la génétique des populations. 1996, Laboratoire Genome Populations, Interactions CNRS, Université de Montpellier II, 4.02
Google Scholar
Rice WR: Analyzing tables of statistical tests. Evolution. 1989, 43: 223-225. 10.2307/2409177.
Article
Google Scholar
Goudet J: FSTAT, a program to estimate and test gene diversities and fixation indices Version 2.9.3. 2001, Lausanne University, Lausanne, Switzerland
Google Scholar
Luikart GL, Cornuet JM: Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol. 1998, 12: 228-237. 10.1046/j.1523-1739.1998.96388.x.
Article
Google Scholar
Raymond M, Rousset F: GENEPOP (version 1.2): population genetics software for exact test and ecumenism. J Hered. 1995, 86: 248-250.
Google Scholar
Pritchard JK, Stephens M, Donnelly P: Inference of population structure using multilocus genotype data. Genetics. 2000, 155: 945-959.
CAS
PubMed
PubMed Central
Google Scholar
Evanno G, Regnaut S, Goudet J: Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol. 2005, 14: 2611-2620. 10.1111/j.1365-294X.2005.02553.x.
Article
CAS
PubMed
Google Scholar
Kitamura A, Takano O, Takata H, Omote H: Late Pliocene early Pleistocene paleoceanographic evolution of the Japan Sea. Paleogeogr Palaeocl Palaeoecol. 2001, 172: 81-98. 10.1016/S0031-0182(01)00272-3.
Article
Google Scholar
Yamamoto H: Submarine geology and post-opening tectonic movements in the southern region of the Japan Sea. Mar Geol. 1993, 112: 133-150. 10.1016/0025-3227(93)90165-R.
Article
Google Scholar
Tada R: Paleoceanographic evolution of the Japan Sea. Paleogeogr Palaeocl Palaeoecol. 1994, 108: 487-508. 10.1016/0031-0182(94)90248-8.
Article
Google Scholar
Xu JW, Chan TY, Tsang LM, Chu KH: Phylogeography of the mitten crab Eriocheir sensu stricto in East Asia: Pleistocene isolation, population expansion and secondary contact. Mol Phylogenet Evol. 2009, 52: 45-56. 10.1016/j.ympev.2009.02.007.
Article
PubMed
Google Scholar
Crosetti D, Avise JC, Placidi F, Rossi AR, Sola L: Geographic variability in the grey mullet Mugil cephalus: preliminary results of mtDNA and chromosome analyses. Aquaculture. 1993, 111: 95-101. 10.1016/0044-8486(93)90028-W.
Article
Google Scholar
Crosetti D, Nelson WS, Avise JC: Pronounced genetic structure of mitochondrial DNA among populations of the circumglobally distributed grey mullet (Mugil cephalus Linaeus). J Fish Biol. 1994, 44: 47-58. 10.1111/j.1095-8649.1994.tb01584.x.
Article
CAS
Google Scholar
Rossi AR, Capula M, Crosetti D, Sola L, Campton DE: Allozyme variation in global populations of striped mullet, Mugil cephalus (Pisces: Mugilidae). Mar Biol. 1998, 131: 203-212. 10.1007/s002270050312.
Article
CAS
Google Scholar
Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W: Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA. 2004, 101: 14812-14817. 10.1073/pnas.0406166101.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tung IH: On the fishery biology of gray mullet, Mugil cephalus L., in Taiwan. Rep Inst Fish Biol Ministry Econ Affairs Natl Taiwan Univ. 1981, 3: 38-102.
Google Scholar
Chen WY, Su WC: Reproductive biology of the flathead mullets, Mugil cephalus L. of Taiwan. Study on the resource of flathead mullet in Taiwan, 1983-1985. Edited by: Su WC. 1986, Kaohsiung: Kaohsiung Branch TFRI, 73-80.
Google Scholar
Huang CS, Su WC: Studies on the fluctuations of fishing conditions for flathead mullet (Mugil cephalus Linnaeus) from the western coast of Taiwan. J Fish Soc Taiwan. 1989, 16: 47-83.
Google Scholar
Lee CY, Kuo CL: Kinds, local names and seasonal appearance of the fingerlings of grey mullet, Mugil cephalus L., in coastal waters of west Taiwan. China Fish Monthly. 1990, 448: 13-18.
Google Scholar
Chang CW, Tzeng WN, Lee YC: Recruitment and hatching dates of gray mullet (Mugil cephalus L.) juveniles in the Tanshui estuary of northwest Taiwan. Zool Stud. 2000, 39: 99-106.
Google Scholar
Chang CW, Tzeng WN: Species composition and seasonal occurrence of mullets (Pisces, Mugilidae) in the Tanshui estuary northwest Taiwan. J Fish Soc Taiwan. 2000, 27: 253-262.
Google Scholar
Buonaccorsi VP, Kimbrell CA, Lynn EA, Vetter RD: Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal. Can J Fish Aquat Sci. 2002, 59: 1374-1384. 10.1139/f02-101.
Article
CAS
Google Scholar
Galarza JA, Carreras-Carbonell J, Macpherson E, Pascual M, Roques S, Turner GF, Rico C: The influence of oceanographic fronts and early-life-history traits on connectivity among littoral fish species. Proc Natl Acad Sci USA. 2009, 106: 1473-1478. 10.1073/pnas.0806804106.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pelc RA, Warner RR, Gaines SD: Geographical patterns of genetic structure in marine species with contrasting life history. J Biogeogr. 2009, 36: 1881-1890. 10.1111/j.1365-2699.2009.02138.x.
Article
Google Scholar
Hu J, Kawamura H, Hong H, Qi Y: A review on the currents in the South China Sea: seasonal circulation, South China Sea Warm Current and Kuroshio intrusion. J Oceanogr. 2000, 56: 607-624. 10.1023/A:1011117531252.
Article
Google Scholar
Teagle DAH, Bickle MJ, Alt JC: Recharge flux to ocean-ridge black smoker systems: a geochemical estimate from ODP Hole 504B. Earth Planet Sci Let. 2003, 210: 81-89. 10.1016/S0012-821X(03)00126-2.
Article
CAS
Google Scholar
Teague WJ, Jacobs GA, Ko DS, Tang TY, Chang KI, Suk MS: Connectivity of the Taiwan, Cheju, and Korea straits. Cont Shelf Res. 2003, 23: 63-77. 10.1016/S0278-4343(02)00150-4.
Article
Google Scholar
Liu JY, Brown CL, Yang TB: Phylogenetic relationships of mullets (Mugilidae) in China Seas based on partial sequences of two mitochondrial genes. Biochem Syst Ecol. 2010, 38: 647-655. 10.1016/j.bse.2010.01.007.
Article
CAS
Google Scholar
Liu JX, Gao TX, Yokogawa K, Zhang YP: Differential population structuring and demographic history of two closely related fish species, Japanese sea bass (Lateolabrax japonicus) and spotted sea bass (Lateolabrax maculatus) in Northwestern Pacific. Mol Phylogenet Evol. 2006, 39: 799-811. 10.1016/j.ympev.2006.01.009.
Article
CAS
PubMed
Google Scholar
Tzeng TD, Yeh SY, Hui CF: Population genetic structure of the kuruma prawn (Penaeus japonicus) in East Asia inferred from mitochondrial DNA sequences. ICES J Mar Sci. 2004, 61: 913-920. 10.1016/j.icesjms.2004.06.015.
Article
CAS
Google Scholar
Pan BP, Song LS, Bu WJ, Sun JS: Studies on genetic diversity and differentiation between two allopatric populations of Cyclina sinensis. Acta Hydrobiol Sin. 2005, 29: 372-387.
CAS
Google Scholar
Zhao YM, Li Q, Kong LF, Bao ZM, Wang RC: Genetic diversity and divergence among clam Cyclina sinensis populations assessed using amplified fragment length polymorphism. Fish Sci. 2007, 73: 1338-1343.
CAS
Google Scholar
Zheng WJ, Zhu SH, Shen XQ, Liu BQ, Pan ZC, Ye YF: Genetic Differentiation of Tegillarca granosa Based on Mitochondrial COI Gene Sequences. Zool Res. 2009, 30: 17-23. 10.3724/SP.J.1141.2009.01017.
Article
CAS
Google Scholar
Li CH, Li TW, Song LS, Su XR: RAPD analysis on intra-species differentiation of Tegillarca granosa populations to the south and north of Fujian province. Zool Res. 2003, 24: 362-366.
Google Scholar
Yin W, Fu C, Guo L, He Q, Li J, Jin B, Wu Q, Li B: Species delimitation and historical biogeography in the genus Helice (Brachyura: Varunidae) in the Northwestern Pacific. Zool Sci. 2009, 26: 467-475. 10.2108/zsj.26.467.
Article
CAS
PubMed
Google Scholar