Rompler H, Staubert C, Thor D, Schulz A, Hofreiter M, Schoneberg T: G protein-coupled time travel: evolutionary aspects of GPCR research. Mol Interv. 2007, 7 (1): 17-25. 10.1124/mi.7.1.5.
Article
PubMed
Google Scholar
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, et al: Initial sequencing and comparative analysis of the mouse genome. Nature. 2002, 420 (6915): 520-562. 10.1038/nature01262.
Article
CAS
PubMed
Google Scholar
Gloriam DE, Fredriksson R, Schioth HB: The G protein-coupled receptor subset of the rat genome. BMC genomics. 2007, 8: 338-10.1186/1471-2164-8-338.
Article
PubMed Central
PubMed
Google Scholar
Ono Y, Fujibuchi W, Suwa M: Automatic gene collection system for genome-scale overview of G-protein coupled receptors in eukaryotes. Gene. 2005, 364: 63-73. 10.1016/j.gene.2005.05.038.
Article
CAS
PubMed
Google Scholar
Fredriksson R, Schioth HB: The repertoire of G-protein-coupled receptors in fully sequenced genomes. Molecular pharmacology. 2005, 67 (5): 1414-1425. 10.1124/mol.104.009001.
Article
CAS
PubMed
Google Scholar
Soppa J: Two hypotheses–one answer. Sequence comparison does not support an evolutionary link between halobacterial retinal proteins including bacteriorhodopsin and eukaryotic G-protein-coupled receptors. FEBS Lett. 1994, 342 (1): 7-11. 10.1016/0014-5793(94)80573-3.
Article
CAS
PubMed
Google Scholar
Anantharaman V, Aravind L: Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria. BMC Genomics. 2003, 4 (1): 34-10.1186/1471-2164-4-34.
Article
PubMed Central
PubMed
Google Scholar
Darwin C: The Origin of Species. London. 1859
Google Scholar
Gehring WJ: New perspectives on eye development and the evolution of eyes and photoreceptors. J Hered. 2005, 96 (3): 171-184. 10.1093/jhered/esi027.
Article
CAS
PubMed
Google Scholar
Terakita A: The opsins. Genome Biol. 2005, 6 (3): 213-10.1186/gb-2005-6-3-213.
Article
PubMed Central
PubMed
Google Scholar
Premont RT, Macrae AD, Aparicio SA, Kendall HE, Welch JE, Lefkowitz RJ: The GRK4 subfamily of G protein-coupled receptor kinases. Alternative splicing, gene organization, and sequence conservation. J Biol Chem. 1999, 274 (41): 29381-29389. 10.1074/jbc.274.41.29381.
Article
CAS
PubMed
Google Scholar
Benovic JL, Kuhn H, Weyand I, Codina J, Caron MG, Lefkowitz RJ: Functional desensitization of the isolated beta-adrenergic receptor by the beta-adrenergic receptor kinase: potential role of an analog of the retinal protein arrestin (48-kDa protein). Proceedings of the National Academy of Sciences of the United States of America. 1987, 84 (24): 8879-8882. 10.1073/pnas.84.24.8879.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lohse MJ, Benovic JL, Codina J, Caron MG, Lefkowitz RJ: beta-Arrestin: a protein that regulates beta-adrenergic receptor function. Science. 1990, 248 (4962): 1547-1550. 10.1126/science.2163110.
Article
CAS
PubMed
Google Scholar
Wilden U, Hall SW, Kuhn H: Phosphodiesterase activation by photoexcited rhodopsin is quenched when rhodopsin is phosphorylated and binds the intrinsic 48-kDa protein of rod outer segments. Proceedings of the National Academy of Sciences of the United States of America. 1986, 83 (5): 1174-1178. 10.1073/pnas.83.5.1174.
Article
PubMed Central
CAS
PubMed
Google Scholar
Goodman OB, Krupnick JG, Santini F, Gurevich VV, Penn RB, Gagnon AW, Keen JH, Benovic JL: Beta-arrestin acts as a clathrin adaptor in endocytosis of the beta2-adrenergic receptor. Nature. 1996, 383 (6599): 447-450. 10.1038/383447a0.
Article
CAS
PubMed
Google Scholar
Laporte SA, Oakley RH, Zhang J, Holt JA, Ferguson SS, Caron MG, Barak LS: The beta2-adrenergic receptor/betaarrestin complex recruits the clathrin adaptor AP-2 during endocytosis. Proceedings of the National Academy of Sciences of the United States of America. 1999, 96 (7): 3712-3717. 10.1073/pnas.96.7.3712.
Article
PubMed Central
CAS
PubMed
Google Scholar
Shenoy SK, Lefkowitz RJ: Trafficking patterns of beta-arrestin and G protein-coupled receptors determined by the kinetics of beta-arrestin deubiquitination. The Journal of biological chemistry. 2003, 278 (16): 14498-14506. 10.1074/jbc.M209626200.
Article
CAS
PubMed
Google Scholar
Shenoy SK, McDonald PH, Kohout TA, Lefkowitz RJ: Regulation of receptor fate by ubiquitination of activated beta 2-adrenergic receptor and beta-arrestin. Science. 2001, 294 (5545): 1307-1313. 10.1126/science.1063866.
Article
CAS
PubMed
Google Scholar
Luttrell LM, Ferguson SS, Daaka Y, Miller WE, Maudsley S, Della Rocca GJ, Lin F, Kawakatsu H, Owada K, Luttrell DK, Caron MG, Lefkowitz RJ: Beta-arrestin-dependent formation of beta2 adrenergic receptor-Src protein kinase complexes. Science. 1999, 283 (5402): 655-661. 10.1126/science.283.5402.655.
Article
CAS
PubMed
Google Scholar
McDonald PH, Chow CW, Miller WE, Laporte SA, Field ME, Lin FT, Davis RJ, Lefkowitz RJ: Beta-arrestin 2: a receptor-regulated MAPK scaffold for the activation of JNK3. Science. 2000, 290 (5496): 1574-1577. 10.1126/science.290.5496.1574.
Article
CAS
PubMed
Google Scholar
DeWire SM, Ahn S, Lefkowitz RJ, Shenoy SK: Beta-arrestins and cell signaling. Annu Rev Physiol. 2007, 69: 483-510. 10.1146/annurev.physiol.69.022405.154749.
Article
CAS
PubMed
Google Scholar
Kuhn H, Hall SW, Wilden U: Light-induced binding of 48-kDa protein to photoreceptor membranes is highly enhanced by phosphorylation of rhodopsin. FEBS Lett. 1984, 176 (2): 473-478. 10.1016/0014-5793(84)81221-1.
Article
CAS
PubMed
Google Scholar
Granzin J, Wilden U, Choe HW, Labahn J, Krafft B, Buldt G: X-ray crystal structure of arrestin from bovine rod outer segments. Nature. 1998, 391 (6670): 918-921. 10.1038/36147.
Article
CAS
PubMed
Google Scholar
Hirsch JA, Schubert C, Gurevich VV, Sigler PB: The 2.8 A crystal structure of visual arrestin: a model for arrestin's regulation. Cell. 1999, 97 (2): 257-269. 10.1016/S0092-8674(00)80735-7.
Article
CAS
PubMed
Google Scholar
Vishnivetskiy SA, Schubert C, Climaco GC, Gurevich YV, Velez MG, Gurevich VV: An additional phosphate-binding element in arrestin molecule. Implications for the mechanism of arrestin activation. J Biol Chem. 2000, 275 (52): 41049-41057. 10.1074/jbc.M007159200.
Article
CAS
PubMed
Google Scholar
Gurevich EV, Gurevich VV: Arrestins: ubiquitous regulators of cellular signaling pathways. Genome Biol. 2006, 7 (9): 236-10.1186/gb-2006-7-9-236.
Article
PubMed Central
PubMed
Google Scholar
Boase NA, Kelly JM: A role for creD, a carbon catabolite repression gene from Aspergillus nidulans, in ubiquitination. Mol Microbiol. 2004, 53 (3): 929-940. 10.1111/j.1365-2958.2004.04172.x.
Article
CAS
PubMed
Google Scholar
Herranz S, Rodriguez JM, Bussink HJ, Sanchez-Ferrero JC, Arst HN, Penalva MA, Vincent O: Arrestin-related proteins mediate pH signaling in fungi. Proc Natl Acad Sci USA. 2005, 102 (34): 12141-12146. 10.1073/pnas.0504776102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Merrill CE, Pitts RJ, Zwiebel LJ: Molecular characterization of arrestin family members in the malaria vector mosquito, Anopheles gambiae. Insect Mol Biol. 2003, 12 (6): 641-650. 10.1046/j.1365-2583.2003.00450.x.
Article
CAS
PubMed
Google Scholar
Fukuto HS, Ferkey DM, Apicella AJ, Lans H, Sharmeen T, Chen W, Lefkowitz RJ, Jansen G, Schafer WR, Hart AC: G protein-coupled receptor kinase function is essential for chemosensation in C. elegans. Neuron. 2004, 42 (4): 581-593. 10.1016/S0896-6273(04)00252-1.
Article
CAS
PubMed
Google Scholar
Nichols CD, Sanders-Bush E: Molecular genetic responses to lysergic acid diethylamide include transcriptional activation of MAP kinase phosphatase-1, C/EBP-beta and ILAD-1, a novel gene with homology to arrestins. J Neurochem. 2004, 90 (3): 576-584. 10.1111/j.1471-4159.2004.02515.x.
Article
CAS
PubMed
Google Scholar
Oka S, Masutani H, Liu W, Horita H, Wang D, Kizaka-Kondoh S, Yodoi J: Thioredoxin-binding protein-2-like inducible membrane protein is a novel vitamin D3 and peroxisome proliferator-activated receptor (PPAR)gamma ligand target protein that regulates PPARgamma signaling. Endocrinology. 2006, 147 (2): 733-743. 10.1210/en.2005-0679.
Article
CAS
PubMed
Google Scholar
Patwari P, Higgins LJ, Chutkow WA, Yoshioka J, Lee RT: The interaction of thioredoxin with Txnip. Evidence for formation of a mixed disulfide by disulfide exchange. The Journal of biological chemistry. 2006, 281 (31): 21884-21891. 10.1074/jbc.M600427200.
Article
PubMed Central
CAS
PubMed
Google Scholar
Plachetzki DC, Degnan BM, Oakley TH: The Origins of Novel Protein Interactions during Animal Opsin Evolution. PLoS ONE. 2007, 2 (10): e1054-10.1371/journal.pone.0001054.
Article
PubMed Central
PubMed
Google Scholar
Suga H, Schmid V, Gehring WJ: Evolution and functional diversity of jellyfish opsins. Curr Biol. 2008, 18 (1): 51-55. 10.1016/j.cub.2007.11.059.
Article
CAS
PubMed
Google Scholar
Eichinger L, Pachebat JA, Glockner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, et al: The genome of the social amoeba Dictyostelium discoideum. Nature. 2005, 435 (7038): 43-57. 10.1038/nature03481.
Article
PubMed Central
CAS
PubMed
Google Scholar
Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, et al: Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol. 2006, 4 (9): e286-10.1371/journal.pbio.0040286.
Article
PubMed Central
PubMed
Google Scholar
Kennelly PJ: Protein kinases and protein phosphatases in prokaryotes: a genomic perspective. FEMS Microbiol Lett. 2002, 206 (1): 1-8. 10.1111/j.1574-6968.2002.tb10978.x.
Article
CAS
PubMed
Google Scholar
Collins BM, Norwood SJ, Kerr MC, Mahony D, Seaman MN, Teasdale RD, Owen DJ: Structure of Vps26B and mapping of its interaction with the retromer protein complex. Traffic. 2008, 9 (3): 366-379. 10.1111/j.1600-0854.2007.00688.x.
Article
CAS
PubMed
Google Scholar
Shi H, Rojas R, Bonifacino JS, Hurley JH: The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain. Nat Struct Mol Biol. 2006, 13 (6): 540-548. 10.1038/nsmb1103.
Article
PubMed Central
CAS
PubMed
Google Scholar
Han M, Gurevich VV, Vishnivetskiy SA, Sigler PB, Schubert C: Crystal structure of beta-arrestin at 1.9 A: possible mechanism of receptor binding and membrane Translocation. Structure. 2001, 9 (9): 869-880. 10.1016/S0969-2126(01)00644-X.
Article
CAS
PubMed
Google Scholar
Takegawa K, Iwaki T, Fujita Y, Morita T, Hosomi A, Tanaka N: Vesicle-mediated protein transport pathways to the vacuole in Schizosaccharomyces pombe. Cell Struct Funct. 2003, 28 (5): 399-417. 10.1247/csf.28.399.
Article
CAS
PubMed
Google Scholar
Bonifacino JS, Rojas R: Retrograde transport from endosomes to the trans-Golgi network. Nat Rev Mol Cell Biol. 2006, 7 (8): 568-579. 10.1038/nrm1985.
Article
CAS
PubMed
Google Scholar
Eaton S: Retromer retrieves wntless. Dev Cell. 2008, 14 (1): 4-6. 10.1016/j.devcel.2007.12.014.
Article
CAS
PubMed
Google Scholar
McDonald PH, Cote NL, Lin FT, Premont RT, Pitcher JA, Lefkowitz RJ: Identification of NSF as a beta-arrestin1-binding protein. Implications for beta2-adrenergic receptor regulation. J Biol Chem. 1999, 274 (16): 10677-10680. 10.1074/jbc.274.16.10677.
Article
CAS
PubMed
Google Scholar
Itin C, Rancano C, Nakajima Y, Pfeffer SR: A novel assay reveals a role for soluble N-ethylmaleimide-sensitive fusion attachment protein in mannose 6-phosphate receptor transport from endosomes to the trans Golgi network. J Biol Chem. 1997, 272 (44): 27737-27744. 10.1074/jbc.272.44.27737.
Article
CAS
PubMed
Google Scholar
Xiao K, McClatchy DB, Shukla AK, Zhao Y, Chen M, Shenoy SK, Yates JR, Lefkowitz RJ: Functional specialization of beta-arrestin interactions revealed by proteomic analysis. Proceedings of the National Academy of Sciences of the United States of America. 2007, 104 (29): 12011-12016. 10.1073/pnas.0704849104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Daulat AM, Maurice P, Froment C, Guillaume JL, Broussard C, Monsarrat B, Delagrange P, Jockers R: Purification and identification of G protein-coupled receptor protein complexes under native conditions. Mol Cell Proteomics. 2007, 6 (5): 835-844. 10.1074/mcp.M600298-MCP200.
Article
CAS
PubMed
Google Scholar
Griffin CT, Trejo J, Magnuson T: Genetic evidence for a mammalian retromer complex containing sorting nexins 1 and 2. Proc Natl Acad Sci USA. 2005, 102 (42): 15173-15177. 10.1073/pnas.0409558102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dinh DT, Qian H, Seeber R, Lim E, Pfleger K, Eidne KA, Thomas WG: Helix I of beta-arrestin is involved in postendocytic trafficking but is not required for membrane translocation, receptor binding, and internalization. Molecular pharmacology. 2005, 67 (2): 375-382. 10.1124/mol.104.004721.
Article
CAS
PubMed
Google Scholar
Macias MJ, Wiesner S, Sudol M: WW and SH3 domains, two different scaffolds to recognize proline-rich ligands. FEBS letters. 2002, 513 (1): 30-37. 10.1016/S0014-5793(01)03290-2.
Article
CAS
PubMed
Google Scholar
Andoh T, Hirata Y, Kikuchi A: PY motifs of Rod1 are required for binding to Rsp5 and for drug resistance. FEBS Lett. 2002, 525 (1–3): 131-134. 10.1016/S0014-5793(02)03104-6.
Article
CAS
PubMed
Google Scholar
Gupta R, Kus B, Fladd C, Wasmuth J, Tonikian R, Sidhu S, Krogan NJ, Parkinson J, Rotin D: Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast. Mol Syst Biol. 2007, 3: 116-10.1038/msb4100159.
Article
PubMed Central
PubMed
Google Scholar
Shenoy SK: Seven-transmembrane receptors and ubiquitination. Circ Res. 2007, 100 (8): 1142-1154. 10.1161/01.RES.0000261939.88744.5a.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dunn R, Hicke L: Domains of the Rsp5 ubiquitin-protein ligase required for receptor-mediated and fluid-phase endocytosis. Molecular biology of the cell. 2001, 12 (2): 421-435.
Article
PubMed Central
CAS
PubMed
Google Scholar
Marchese A, Raiborg C, Santini F, Keen JH, Stenmark H, Benovic JL: The E3 ubiquitin ligase AIP4 mediates ubiquitination and sorting of the G protein-coupled receptor CXCR4. Dev Cell. 2003, 5 (5): 709-722. 10.1016/S1534-5807(03)00321-6.
Article
CAS
PubMed
Google Scholar
Arendt D, Tessmar-Raible K, Snyman H, Dorresteijn AW, Wittbrodt J: Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain. Science. 2004, 306 (5697): 869-871. 10.1126/science.1099955.
Article
CAS
PubMed
Google Scholar
Alvarez CE, Robison K, Gilbert W: Novel Gq alpha isoform is a candidate transducer of rhodopsin signaling in a Drosophila testes-autonomous pacemaker. Proceedings of the National Academy of Sciences of the United States of America. 1996, 93 (22): 12278-12282. 10.1073/pnas.93.22.12278.
Article
PubMed Central
CAS
PubMed
Google Scholar
Leys SP, Cronin TW, Degnan BM, Marshall JN: Spectral sensitivity in a sponge larva. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2002, 188 (3): 199-202. 10.1007/s00359-002-0293-y.
Article
PubMed
Google Scholar
Kozmik Z, Daube M, Frei E, Norman B, Kos L, Dishaw LJ, Noll M, Piatigorsky J: Role of Pax genes in eye evolution: a cnidarian PaxB gene uniting Pax2 and Pax6 functions. Dev Cell. 2003, 5 (5): 773-785. 10.1016/S1534-5807(03)00325-3.
Article
CAS
PubMed
Google Scholar
Alvarez CE: Alternative Splicing of Drosophila DGq-alpha. Doctoral Thesis. 1997, Cambridge, MA: Harvard University
Google Scholar
Ohno S: Evolution by Gene Duplication. 1970, New York: Springer-Verlag
Chapter
Google Scholar
Hisatomi O, Tokunaga F: Molecular evolution of proteins involved in vertebrate phototransduction. Comp Biochem Physiol B Biochem Mol Biol. 2002, 133 (4): 509-522. 10.1016/S1096-4959(02)00127-6.
Article
PubMed
Google Scholar
Montell C: Visual transduction in Drosophila. Annu Rev Cell Dev Biol. 1999, 15: 231-268. 10.1146/annurev.cellbio.15.1.231.
Article
CAS
PubMed
Google Scholar
Parker N: In the Blink of an Eye. 2003, New York: Perseus Publishing
Google Scholar
Conway Morris S: Darwin's dilemma: the realities of the Cambrian 'explosion'. Philos Trans R Soc Lond B Biol Sci. 2006, 361 (1470): 1069-1083. 10.1098/rstb.2006.1846.
Article
PubMed Central
PubMed
Google Scholar
Gurevich VV, Gurevich EV: The structural basis of arrestin-mediated regulation of G-protein-coupled receptors. Pharmacology & therapeutics. 2006, 110 (3): 465-502. 10.1016/j.pharmthera.2005.09.008.
Article
CAS
Google Scholar
Yamamoto Y, Sakamoto M, Fujii G, Kanetaka K, Asaka M, Hirohashi S: Cloning and characterization of a novel gene, DRH1, down-regulated in advanced human hepatocellular carcinoma. Clin Cancer Res. 2001, 7 (2): 297-303.
CAS
PubMed
Google Scholar
Milano SK, Kim YM, Stefano FP, Benovic JL, Brenner C: Nonvisual arrestin oligomerization and cellular localization are regulated by inositol hexakisphosphate binding. J Biol Chem. 2006, 281 (14): 9812-9823. 10.1074/jbc.M512703200.
Article
CAS
PubMed
Google Scholar
Basic Local Alignment Search Tool. [http://www.ncbi.nlm.nih.gov/BLAST/]
HMMER. [http://hmmer.janelia.org/]
Durbin R, Eddy S, Krogh A, Mitchison G: Biological sequence analysis: probabilistic models of proteins and nucleic acids. 1998, Cambridge, UK: Cambridge University Press
Chapter
Google Scholar
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR: The Pfam protein families database. Nucleic Acids Res. 2004, D138-141. 10.1093/nar/gkh121. 32 Database
Marchler-Bauer A, Bryant SH: CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 2004, W327-331. 10.1093/nar/gkh454. 32 Web Server
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25 (17): 3389-3402. 10.1093/nar/25.17.3389.
Article
PubMed Central
CAS
PubMed
Google Scholar
Santillo S, Orlando P, De Petrocellis L, Cristino L, Guglielmotti V, Musio C: Evolving visual pigments: hints from the opsin-based proteins in a phylogenetically old "eyeless" invertebrate. Biosystems. 2006, 86 (1–3): 3-17. 10.1016/j.biosystems.2006.03.008.
Article
CAS
PubMed
Google Scholar
Nei M, Kumar S: Molecular Evolution and Phylogenetics. 2000, Oxford, UK: Oxford University Press
Google Scholar
Sutton RB, Vishnivetskiy SA, Robert J, Hanson SM, Raman D, Knox BE, Kono M, Navarro J, Gurevich VV: Crystal structure of cone arrestin at 2.3A: evolution of receptor specificity. J Mol Biol. 2005, 354 (5): 1069-1080. 10.1016/j.jmb.2005.10.023.
Article
CAS
PubMed
Google Scholar