Fitch DH: Evolution: an ecological context for C. elegans. Curr Biol. 2005, 15: R655-658. 10.1016/j.cub.2005.08.028.
Article
CAS
PubMed
Google Scholar
Kiontke K, Gavin NP, Raynes Y, Roehrig C, Piano F, Fitch DH: Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss. Proc Natl Acad Sci USA. 2004, 101: 9003-9008. 10.1073/pnas.0403094101.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cho S, Jin SW, Cohen A, Ellis RE: A phylogeny of Caenorhabditis reveals frequent loss of introns during nematode evolution. Genome Res. 2004, 14: 1207-1220. 10.1101/gr.2639304.
Article
PubMed Central
CAS
PubMed
Google Scholar
Muller HJ: The relation of recombination to mutational advance. Mutat Res. 1964, 1: 2-9.
Article
Google Scholar
Felsenstein J: The evolutionary advantage of recombination. Genetics. 1974, 78: 737-756.
PubMed Central
CAS
PubMed
Google Scholar
Loewe L: Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA. Genet Res. 2006, 87: 133-159. 10.1017/S0016672306008123.
Article
CAS
PubMed
Google Scholar
Lynch M, Gabriel W: Mutation load and the survival of small populations. Evolution. 1990, 44: 1725-1737. 10.2307/2409502.
Article
Google Scholar
Lynch M, Butcher RBD, Gabriel W: The mutational meltdown in asexual populations. J Hered. 1993, 84: 339-344.
CAS
PubMed
Google Scholar
Gabriel W, Lynch M, Bürger R: Muller's ratchet and mutational meltdowns. Evolution. 1993, 47: 1744-1757. 10.2307/2410218.
Article
Google Scholar
Heller R, Maynard Smith J: Does Muller's ratchet work with selfing?. Genet Res. 1978, 32: 289-293.
Article
Google Scholar
Charlesworth D, Morgan MT, Charlesworth B: Mutation accumulation in finite outbreeding and inbreeding populations. Genet Res. 1993, 61: 39-56.
Article
Google Scholar
Loewe L, Lamatsch D: Quantifying the threat of extinction from Muller's ratchet in the Amazon molly (Poecilia formosa). BMC Evol Biol. 2008, 8: 88-10.1186/1471-2148-8-88.
Article
PubMed Central
PubMed
Google Scholar
Cutter AD: Nucleotide polymorphism and linkage disequilibrium in wild populations of the partial selfer Caenorhabditis elegans. Genetics. 2006, 172: 171-184. 10.1534/genetics.105.048207.
Article
PubMed Central
CAS
PubMed
Google Scholar
Barriere A, Felix MA: High local genetic diversity and low outcrossing rate in Caenorhabditis elegans natural populations. Curr Biol. 2005, 15: 1176-1184. 10.1016/j.cub.2005.06.022.
Article
CAS
PubMed
Google Scholar
Sivasundar A, Hey J: Sampling from natural populations with RNAi reveals high outcrossing and population structure in Caenorhabditis elegans. Curr Biol. 2005, 15: 1598-1602. 10.1016/j.cub.2005.08.034.
Article
CAS
PubMed
Google Scholar
Sivasundar A, Hey J: Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species. Genetics. 2003, 163: 147-157.
PubMed Central
CAS
PubMed
Google Scholar
Cutter AD, Baird SE, Charlesworth D: High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei. Genetics. 2006, 174: 901-913. 10.1534/genetics.106.061879.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chasnov JR, So WK, Chan CM, Chow KL: The species, sex, and stage specificity of a Caenorhabditis sex pheromone. Proc Natl Acad Sci USA. 2007, 104: 6730-6735. 10.1073/pnas.0608050104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gessler DDG: The constraints of finite size in asexual populations and the rate of the ratchet. Genet Res. 1995, 66: 241-253.
Article
CAS
PubMed
Google Scholar
Stephan W, Chao L, Smale JG: The advance of Muller's ratchet in a haploid asexual population: Approximate solutions based on diffusion theory. Genet Res. 1993, 61: 225-231.
Article
CAS
PubMed
Google Scholar
Stephan W, Kim Y: Recent applications of diffusion theory to population genetics. Modern developments in theoretical population genetics. Edited by: Slatkin M, Veuille M. 2002, Oxford: Oxford University Press, 72-93.
Google Scholar
Loewe L: Evolution@home: observations on participant choice, work unit variation and low-effort global computing. Softw Pract Exper. 2007, 37: 1289-1318. 10.1002/spe.806.
Article
Google Scholar
Loewe L, Charlesworth B: Inferring the distribution of mutational effects on fitness in Drosophila. Biol Lett. 2006, 2: 426-430. 10.1098/rsbl.2006.0481.
Article
PubMed Central
PubMed
Google Scholar
Eyre-Walker A, Keightley PD: The distribution of fitness effects of new mutations. Nat Rev Genet. 2007, 8: 610-618. 10.1038/nrg2146.
Article
CAS
PubMed
Google Scholar
Piganeau G, Gardner M, Eyre-Walker A: A broad survey of recombination in animal mitochondria. Mol Biol Evol. 2004, 21: 2319-2325. 10.1093/molbev/msh244.
Article
CAS
PubMed
Google Scholar
Lunt DH, Hyman BC: Animal mitochondrial DNA recombination. Nature. 1997, 387: 247-10.1038/387247a0.
Article
CAS
PubMed
Google Scholar
Antezana MA, Hudson RR: Before crossing over: The advantages of eukaryotic sex in genomes lacking chiasmatic recombination. Genet Res. 1997, 70: 7-25. 10.1017/S0016672397002875.
Article
CAS
PubMed
Google Scholar
Omilian AR, Cristescu ME, Dudycha JL, Lynch M: Ameiotic recombination in asexual lineages of Daphnia. Proc Natl Acad Sci USA. 2006, 103: 18638-18643. 10.1073/pnas.0606435103.
Article
PubMed Central
CAS
PubMed
Google Scholar
Schultz ST, Lynch M: Mutation and extinction: The role of variable mutational effects, synergistic epistasis, beneficial mutations, and the degree of outcrossing. Evolution. 1997, 51: 1363-1371. 10.2307/2411188.
Article
Google Scholar
Barriere A, Felix MA: Temporal Dynamics and Linkage Disequilibrium in Natural C. elegans Populations. Genetics. 2007
Google Scholar
Denver DR, Morris K, Thomas WK: Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing. Mol Biol Evol. 2003, 20: 393-400. 10.1093/molbev/msg044.
Article
CAS
PubMed
Google Scholar
Haber M, Schungel M, Putz A, Muller S, Hasert B, Schulenburg H: Evolutionary history of Caenorhabditis elegans inferred from microsatellites: evidence for spatial and temporal genetic differentiation and the occurrence of outbreeding. Mol Biol Evol. 2005, 22: 160-173. 10.1093/molbev/msh264.
Article
CAS
PubMed
Google Scholar
Dolgin ES, Charlesworth B, Baird SE, Cutter AD: Inbreeding and outbreeding depression in Caenorhabditis nematodes. Evolution. 2007, 61: 1339-1352. 10.1111/j.1558-5646.2007.00118.x.
Article
PubMed
Google Scholar
Stewart AD, Phillips PC: Selection and maintenance of androdioecy in Caenorhabditis elegans. Genetics. 2002, 160: 975-982.
PubMed Central
PubMed
Google Scholar
Chasnov JR, Chow KL: Why are there males in the hermaphroditic species Caenorhabditis elegans?. Genetics. 2002, 160: 983-994.
PubMed Central
CAS
PubMed
Google Scholar
Manoel D, Carvalho S, Phillips PC, Teotonio H: Selection against males in Caenorhabditis elegans under two mutational treatments. Proc Biol Sci. 2007, 274: 417-424. 10.1098/rspb.2006.3739.
Article
PubMed Central
PubMed
Google Scholar
Teotonio H, Manoel D, Phillips PC: Genetic variation for outcrossing among Caenorhabditis elegans isolates. Evolution. 2006, 60: 1300-1305.
Article
PubMed
Google Scholar
Cutter AD: Mutation and the experimental evolution of outcrossing in Caenorhabditis elegans. J Evol Biol. 2005, 18: 27-34. 10.1111/j.1420-9101.2004.00804.x.
Article
CAS
PubMed
Google Scholar
White JQ, Nicholas TJ, Gritton J, Truong L, Davidson ER, Jorgensen EM: The sensory circuitry for sexual attraction in C. elegans males. Curr Biol. 2007, 17: 1847-1857. 10.1016/j.cub.2007.09.011.
Article
CAS
PubMed
Google Scholar
Simon JM, Sternberg PW: Evidence of a mate-finding cue in the hermaphrodite nematode Caenorhabditis elegans. Proc Natl Acad Sci USA. 2002, 99: 1598-1603. 10.1073/pnas.032225799.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kleemann GA, Basolo AL: Facultative decrease in mating resistance in hermaphroditic Caenorhabditis elegans with self-sperm depletion. Anim Behav. 2007, 74: 1337-1347.
Article
Google Scholar
Emmons SW, Lipton J: Genetic basis of male sexual behavior. J Neurobiol. 2003, 54: 93-110. 10.1002/neu.10163.
Article
CAS
PubMed
Google Scholar
Lipton J, Kleemann G, Ghosh R, Lints R, Emmons SW: Mate searching in Caenorhabditis elegans: a genetic model for sex drive in a simple invertebrate. J Neurosci. 2004, 24: 7427-7434. 10.1523/JNEUROSCI.1746-04.2004.
Article
CAS
PubMed
Google Scholar
Garcia LR, LeBoeuf B, Koo P: Diversity in mating behavior of hermaphroditic and male-female Caenorhabditis nematodes. Genetics. 2007, 175: 1761-1771. 10.1534/genetics.106.068304.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cutter AD, Wasmuth JD, Washington NL: Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing. Genetics. 2008, 178 (4): 2093-2104. 10.1534/genetics.107.085787.
Article
PubMed Central
CAS
PubMed
Google Scholar
Pal C, Papp B, Lercher MJ: An integrated view of protein evolution. Nat Rev Genet. 2006, 7: 337-348. 10.1038/nrg1838.
Article
CAS
PubMed
Google Scholar
Kimura M: The neutral theory of molecular evolution. 1983, Cambridge: Cambridge University Press
Book
Google Scholar
Estes S, Phillips PC, Denver DR, Thomas WK, Lynch M: Mutation accumulation in populations of varying size: the distribution of mutational effects for fitness correlates in Caenorhabditis elegans. Genetics. 2004, 166: 1269-1279. 10.1534/genetics.166.3.1269.
Article
PubMed Central
CAS
PubMed
Google Scholar
Charlesworth , Morgan , Charlesworth : Inbreeding depression, genetic load, and the evolution of outcrossing rates in a multilocus system with no linkage. Evolution. 1990, 44: 1469-1489. 10.2307/2409330.
Article
Google Scholar
Loewe L, Charlesworth B, Bartolomé C, Nöel V: Estimating selection on non-synonymous mutations. Genetics. 2006, 172: 1079-1092. 10.1534/genetics.105.047217.
Article
PubMed Central
CAS
PubMed
Google Scholar
Koch R, van Luenen HGAM, van der Horst M, Thijssen KL, Plasterk RHA: Single nucleotide polymorphisms in wild isolates of Caenorhabditis elegans. Genome Res. 2000, 10: 1690-1696. 10.1101/gr.GR-1471R.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cutter AD: Multilocus patterns of polymorphism and selection across the X-chromosome of Caenorhabditis remanei. Genetics. 2008,
Google Scholar
Maydan JS, Flibotte S, Edgley ML, Lau J, Selzer RR, Richmond TA, Pofahl NJ, Thomas JH, Moerman DG: Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization. Genome Res. 2007, 17: 337-347. 10.1101/gr.5690307.
Article
PubMed Central
CAS
PubMed
Google Scholar
Charlesworth D, Wright SI: Breeding systems and genome evolution. Curr Opin Genet Dev. 2001, 11: 685-690. 10.1016/S0959-437X(00)00254-9.
Article
CAS
PubMed
Google Scholar
Cutter AD, Payseur BA: Rates of deleterious mutation and the evolution of sex in Caenorhabditis. J Evol Biol. 2003, 16: 812-822. 10.1046/j.1420-9101.2003.00596.x.
Article
CAS
PubMed
Google Scholar
Artieri CG, Haerty W, Gupta BP, Singh RS: Sexual selection and maintenance of sex: Evidence from comparisons of rates of genomic accumulation of mutations and divergence of sex-related genes in sexual and hermaphroditic species of Caenorhabditis. Mol Biol Evol. 2008, doi: doi:10.1093/molbev/msn1046,
Google Scholar
Cutter AD, Wasmuth JD, Washington NL: Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing. Genetics. 2008, 178 (4): 2093-2104. 10.1534/genetics.107.085787.
Article
PubMed Central
CAS
PubMed
Google Scholar
Baer CF, Miyamoto MM, Denver DR: Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat Rev Genet. 2007, 8: 619-631. 10.1038/nrg2158.
Article
CAS
PubMed
Google Scholar
Baer CF, Shaw F, Steding C, Baumgartner M, Hawkins A, Houppert A, Mason N, Reed M, Simonelic K, Woodard W, Lynch M: Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc Natl Acad Sci USA. 2005, 102: 5785-5790. 10.1073/pnas.0406056102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Baer CF, Phillips N, Ostrow D, Avalos A, Blanton D, Boggs A, Keller T, Levy L, Mezerhane E: Cumulative effects of spontaneous mutations for fitness in Caenorhabditis: role of genotype, environment and stress. Genetics. 2006, 174: 1387-1395. 10.1534/genetics.106.061200.
Article
PubMed Central
PubMed
Google Scholar
Estes S, Lynch M: Rapid fitness recovery in mutationally degraded lines of Caenorhabditis elegans. Evolution. 2003, 57: 1022-1030.
Article
PubMed
Google Scholar
Wagner GP, Gabriel W: Quantitative variation in finite parthenogenetic populations: What stops Muller's ratchet in the absence of recombination?. Evolution. 1990, 44: 715-731. 10.2307/2409447.
Article
Google Scholar
Howe DK, Denver DR: Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution. BMC Evol Biol. 2008, 8: 62-10.1186/1471-2148-8-62.
Article
PubMed Central
PubMed
Google Scholar
Bachtrog D, Gordo I: Adaptive evolution of asexual populations under Muller's ratchet. Evolution. 2004, 58: 1403-1413.
Article
PubMed
Google Scholar
Silander OK, Tenaillon O, Chao L: Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. PLoS Biol. 2007, 5: e94-10.1371/journal.pbio.0050094.
Article
PubMed Central
PubMed
Google Scholar
Combadão J, Campos PRA, Dionisio F, Gordo I: Small-world networks decrease the speed of Muller's ratchet. Genet Res. 2007
Google Scholar
Cutter AD: Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate. Molecular Biology & Evolution. 2008, 25: 778-786. 10.1093/molbev/msn024.
Article
CAS
Google Scholar
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, et al: The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 2003, 1: E45-10.1371/journal.pbio.0000045.
Article
PubMed Central
PubMed
Google Scholar
Coghlan A, Wolfe KH: Fourfold faster rate of genome rearrangement in nematodes than in Drosophila. Genome Res. 2002, 12: 857-867. 10.1101/gr.172702.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cutter AD, Felix MA, Barriere A, Charlesworth D: Patterns of nucleotide polymorphism distinguish temperate and tropical wild isolates of Caenorhabditis briggsae. Genetics. 2006, 173: 2021-2031. 10.1534/genetics.106.058651.
Article
PubMed Central
CAS
PubMed
Google Scholar
Söderberg RJ, Berg OG: Mutational interference and the progression of Muller's ratchet when mutations have a broad range of effects. Genetics. 2007, 177: 971-986. 10.1534/genetics.107.073791.
Article
PubMed Central
PubMed
Google Scholar
Wright SI, Nano N, Foxe JP, Dar V-uN: Effective population size and tests of neutrality at cytoplasmic genes in Arabidopsis. Genet Res. 2008, 90: 119-128. 10.1017/S0016672307008920.
Article
CAS
Google Scholar
Pollak E: On the theory of partially inbreeding finite populations. I. Partial selfing. Genetics. 1987, 117: 353-360.
PubMed Central
CAS
PubMed
Google Scholar
Nordborg M, Donnelly P: The coalescent process with selfing. Genetics. 1997, 146: 1185-1195.
PubMed Central
CAS
PubMed
Google Scholar
Ward S, Carrel JS: Fertilization and sperm competition in the nematode Caenorhabditis elegans. Developmental Biology. 1979, 73: 304-321. 10.1016/0012-1606(79)90069-1.
Article
CAS
PubMed
Google Scholar
Hodgkin J, Doniach T: Natural variation and copulatory plug formation in Caenorhabditis elegans. Genetics. 1997, 146: 149-164.
PubMed Central
CAS
PubMed
Google Scholar
Riddle DL, Blumenthal T, Meyer BJ, Priess JR: 1. Introduction to C. elegans III. Life history and evolution. C elegans II. Edited by: Riddle DL, Blumenthal T, Meyer BJ, Priess JR. 1997, Plainview, New York: Cold Spring Harbor Laboratory Press, [http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=ce2.section.27]
Google Scholar
Arantes-Oliveira N, Berman JR, Kenyon C: Healthy animals with extreme longevity. Science. 2003, 302: 611-10.1126/science.1089169.
Article
CAS
PubMed
Google Scholar
Kenyon C, Chang J, Gensch E, Rudner A, Tabtiang R: A C. elegans mutant that lives twice as long as wild type. Nature. 1993, 366: 461-464. 10.1038/366461a0.
Article
CAS
PubMed
Google Scholar
McSorley R: Adaptations of nematodes to environmental extremes. Fla Entomol. 2003, 86: 138-142. 10.1653/0015-4040(2003)086[0138:AONTEE]2.0.CO;2.
Article
Google Scholar
Kiontke K, Sudhaus W: Ecology of Caenorhabditis species. WormBook. Edited by: Fitch DHA. 2006, The C. elegans Research Community, doi/101895/wormbook.1.37.1., [http://www.wormbook.org/]
Google Scholar
Vassilieva LL, Lynch M: The rate of spontaneous mutation for life-history traits in Caenorhabditis elegans. Genetics. 1999, 151: 119-129.
PubMed Central
CAS
PubMed
Google Scholar
Keightley PD, Caballero A: Genomic mutation rates for lifetime reproductive output with lifespan in Caenorhabditis elegans. Proc Natl Acad Sci USA. 1997, 94: 3823-3827. 10.1073/pnas.94.8.3823.
Article
PubMed Central
CAS
PubMed
Google Scholar
Keightley PD, Bataillon TM: Multigeneration maximum-likelihood analysis applied to mutation-accumulation experiments in Caenorhabditis elegans. Genetics. 2000, 154: 1193-1201.
PubMed Central
CAS
PubMed
Google Scholar
Denver DR, Morris K, Lynch M, Thomas WK: High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature. 2004, 430: 679-682. 10.1038/nature02697.
Article
CAS
PubMed
Google Scholar
Denver DR, Feinberg S, Estes S, Thomas WK, Lynch M: Mutation rates, spectra, and hotspots in mismatch repair-deficient Caenorhabditis elegans. Genetics. 2005
Google Scholar
Davies EK, Peters AD, Keightley PD: High frequency of cryptic deleterious mutations in Caenorhabditis elegans. Science. 1999, 285: 1748-1751. 10.1126/science.285.5434.1748.
Article
CAS
PubMed
Google Scholar
Denver DR, Morris K, Lynch M, Vassilieva LL, Thomas WK: High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans. Science. 2000, 289: 2342-2344. 10.1126/science.289.5488.2342.
Article
CAS
PubMed
Google Scholar
Okimoto R, Macfarlane JL, Clary DO, Wolstenholme DR: The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics. 1992, 130: 471-498.
PubMed Central
CAS
PubMed
Google Scholar
The C. elegans Sequencing Consortium: Genome sequence of the nematode C. elegans: a platform for investigating biology. Science. 1998, 282: 2012-2018. 10.1126/science.282.5396.2012.
Article
Google Scholar
Webb CT, Shabalina SA, Ogurtsov AY, Kondrashov AS: Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae. Nucleic Acids Res. 2002, 30: 1233-1239. 10.1093/nar/30.5.1233.
Article
PubMed Central
CAS
PubMed
Google Scholar
Shabalina SA, Kondrashov AS: Pattern of selective constraint in C. elegans and C. briggsae genomes. Genet Res. 1999, 74: 23-30. 10.1017/S0016672399003821.
Article
CAS
PubMed
Google Scholar
Gaffney DJ, Keightley PD: Genomic selective constraints in murid noncoding DNA. PLoS Genetics. 2006, 2: e204-10.1371/journal.pgen.0020204.
Article
PubMed Central
PubMed
Google Scholar
Halligan DL, Keightley PD: Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. Genome Res. 2006, 16: 875-884. 10.1101/gr.5022906.
Article
PubMed Central
CAS
PubMed
Google Scholar
He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, et al: Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray. Genome Res. 2007, 17: 1471-1477. 10.1101/gr.6611807.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cutter AD, Ward S: Sexual and temporal dynamics of molecular evolution in C. elegans development. Mol Biol Evol. 2005, 22: 178-188. 10.1093/molbev/msh267.
Article
CAS
PubMed
Google Scholar
Gordo I, Charlesworth B: The speed of Muller's ratchet with background selection, and the degeneration of Y chromosomes. Genet Res. 2001, 78: 149-161.
Article
CAS
PubMed
Google Scholar
Limpert E, Stahel WA, Abbt M: Log-normal distributions across the sciences: Keys and clues. Bioscience. 2001, 51: 341-352. 10.1641/0006-3568(2001)051[0341:LNDATS]2.0.CO;2.
Article
Google Scholar
Felix MA: Genomes: a helpful cousin for our favourite worm. Curr Biol. 2004, 14: R75-77.
Article
CAS
PubMed
Google Scholar