Smith SE, Read DJ: Mycorrhizal symbiosis. 1997, London, UK: Academic Press, 2
Google Scholar
Remy W, Taylor TN, Hass H, Kerp H: Four hundred-million-year-old vesicular arbuscular mycorrhizae. Proc Natl Acad Sci USA. 1994, 91: 11841-11843. 10.1073/pnas.91.25.11841.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chen W-M, Moulin L, Bontemps C, Gillis M, Vandamme P, Béna G, Boivin-Masson C: Legume symbiotic nitrogen fixation by β-proteobacteria is widespread in nature. J Bact. 2004, 185: 7266-7272. 10.1128/JB.185.24.7266-7272.2003.
Article
Google Scholar
Kistner C, Parniske M: Evolution of signal transduction in intracellular symbiosis. Trends Plant Sci. 2002, 7: 511-518. 10.1016/S1360-1385(02)02356-7.
Article
CAS
PubMed
Google Scholar
Perret X, Staehelin C, Broughton WJ: Molecular basis of symbiotic promiscuity. Microbiol Mol Biol Rev. 2000, 64: 180-201. 10.1128/MMBR.64.1.180-201.2000.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kosuta S, Chabaud M, Lougnon G, Gough C, Dénarié J, Barker DG, Bécard G: A diffusible factor from arbuscular mycorrhizal fungi induces symbiosis-specific MtENOD11 expression in roots of Medicago truncatula. Plant Physiol. 2003, 131: 952-962. 10.1104/pp.011882.
Article
PubMed Central
CAS
PubMed
Google Scholar
Geurts R, Fedorova E, Bisseling T: Nod factor signaling genes and their function in the early stages of Rhizobium infection . Curr Opin Plant Biol. 2005, 8: 346-352. 10.1016/j.pbi.2005.05.013.
Article
CAS
PubMed
Google Scholar
Endre G, Kereszt A, Kevei Z, Mihacea S, Kalò P, Kiss GB: A receptor kinase gene regulating symbiotic nodule development. Nature. 2002, 417: 962-966. 10.1038/nature00842.
Article
CAS
PubMed
Google Scholar
Jones DA, Jones JDG: The role of Leucine-Rich Repeat proteins in plant defences. Adv Bot Res Adv Plant Pathol. 1997, 24: 89-167.
Google Scholar
Hogg BV, Cullimore JV, Ranjeva R, Bono JJ: The DMI1 and DMI2 early symbiotic genes of Medicago truncatula are required for a high-affinity nodulation factor-binding site associated to a particulate fraction of roots. Plant Physiol. 2006, 140: 365-373. 10.1104/pp.105.068981.
Article
PubMed Central
CAS
PubMed
Google Scholar
Riely BK, Ané J-M, Penmetsa RV, Cook DR: Genetic and genomic analysis in model legumes bring Nod-factor signaling to center stage. Curr Opin Plant Biol. 2004, 7: 408-413. 10.1016/j.pbi.2004.04.005.
Article
CAS
PubMed
Google Scholar
De Mita S, Santoni S, Hochu I, Ronfort J, Bataillon T: Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula. J Mol Evol. 2006, 62: 234-244. 10.1007/s00239-004-0367-2.
Article
PubMed
Google Scholar
Béna G, Lyet A, Huguet T, Olivieri I: Medicago – Sinorhizobium symbiotic specificity evolution and the geographic expansion of Medicago. J Evol Biol. 2005, 18: 1547-1558.
Article
PubMed
Google Scholar
Villegas MD, Rome S, Maure L, Domergue O, Gardan L, Bailly X, Cleyet-Marel JC, Brunel B: Nitrogen-fixing sinorhizobia with Medicago laciniata constitute a novel biovar (bv. medicaginis) of S. meliloti. Syst App Microbiol. 2006, 29: 526-538. 10.1016/j.syapm.2005.12.008.
Article
Google Scholar
Goldman N, Yang Z: A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol. 1994, 11: 725-736.
CAS
PubMed
Google Scholar
Yang Z, Bielawski JP: Statistical methods for detecting molecular adaptation. Trends Ecol Evol. 2000, 15: 496-503. 10.1016/S0169-5347(00)01994-7.
Article
PubMed
Google Scholar
Lewis GP, Schrire BD, Mackinder BA, Lock M, (eds.): Legumes of the world. 2005, Kew, UK: Royal Botanic Gardens
Béna G: Molecular phylogeny supports the morphologically based taxonomic transfer of the "medicagoid" Trigonella species into the genus Medicago L. Plant Syst Evol. 2001, 229: 217-236. 10.1007/s006060170012.
Article
Google Scholar
Yang Z, Nielsen R, Goldman N, Pedersen A-MK: Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics. 2000, 155: 431-449.
PubMed Central
CAS
PubMed
Google Scholar
Yang Z, Wong WSW, Nielsen R: Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 2005, 22: 1107-1118. 10.1093/molbev/msi097.
Article
CAS
PubMed
Google Scholar
Kobe B, Deisenhofer J: Crystal-structure of Porcine Ribonuclease Inhibitor, a protein with Leucine-Rich Repeats. Nature. 1993, 366: 751-756. 10.1038/366751a0.
Article
CAS
PubMed
Google Scholar
Yang Z: Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 1998, 15: 568-573.
Article
CAS
PubMed
Google Scholar
Anisimova M, Nielsen R, Yang Z: Effect of recombination on the accuraty of the likelihood method for detecting positive selection at amino acid sites. Genetics. 2003, 164: 1229-1236.
PubMed Central
CAS
PubMed
Google Scholar
Mondragon-Palomino M, Gaut BS: Gene conversion and the evolution of three Leucine-Rich-Repeat gene families in Arabidopsis thaliana . Mol Biol Evol. 2005, 22: 2444-2456. 10.1093/molbev/msi241.
Article
CAS
PubMed
Google Scholar
Sun XL, Cao YL, Wang SP: Point mutations with positive selection were a major force during the evolution of a receptor-kinase resistance gene family of rice. Plant Physiology. 2006, 140: 998-1008. 10.1104/pp.105.073080.
Article
PubMed Central
CAS
PubMed
Google Scholar
Caicedo AL, Schaal BA: Heterogeneous evolutionary processes affect R gene diversity in natural populations of Solanum pimpinellifolium . Proc Natl Acad Sci USA. 2004, 101: 17444-17449. 10.1073/pnas.0407899101.
Article
PubMed Central
CAS
PubMed
Google Scholar
Luck JE, Lawrence GJ, Dodds PN, Shepherd KW, Ellis JG: Regions outside of the Leucine-Rich Repeats of flax rust resistance proteins play a role in specificity determination. Plant Cell. 2000, 12: 1367-1377. 10.1105/tpc.12.8.1367.
Article
PubMed Central
CAS
PubMed
Google Scholar
Esseling JJ, Lhuissier FGP, Emons AMC: A nonsymbiotic root hair tip growth phenotype in NORK -mutated legumes: implications for nodulation factor-induced signaling and formation of a multifaceted root hair pocket for bacteria. Plant Cell. 2004, 16: 933-944. 10.1105/tpc.019653.
Article
PubMed Central
CAS
PubMed
Google Scholar
Thompson JN: Rapid evolution as an ecological process. Trends Ecol Evol. 1998, 13: 329-332. 10.1016/S0169-5347(98)01378-0.
Article
CAS
PubMed
Google Scholar
Selosse M-A, Richard F, He X, Simard SW: Mycorrhizal networks: des liaisons dangereuses?. Trends Ecol Evol. 2006, 21: 621-628. 10.1016/j.tree.2006.07.003.
Article
PubMed
Google Scholar
Ruffel S, Dussault M-H, Palloix B, Bendahmane A, Robaglia C, Caranta C: A natural recessive resistance gene against potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E). Plant J. 2002, 32: 1067-1075. 10.1046/j.1365-313X.2002.01499.x.
Article
CAS
PubMed
Google Scholar
Weerasinghe RR, Bird DM, Allen NS: Root-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicus . Proc Natl Acad Sci USA. 2005, 102: 3147-3152. 10.1073/pnas.0407926102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Staden R: The Staden sequence analysis package. Mol Biotechnol. 1996, 5: 233-241.
Article
CAS
PubMed
Google Scholar
Yang Z: PAML : a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 1997, 13: 555-556.
CAS
PubMed
Google Scholar
Swanson WJ, Nielsen R, Yang Q: Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol. 2003, 20: 18-20.
Article
CAS
PubMed
Google Scholar
Wong WSW, Yang Z, Goldman N, Nielsen R: Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics. 2004, 168: 1041-1051. 10.1534/genetics.104.031153.
Article
PubMed Central
CAS
PubMed
Google Scholar