Hay SI, Guerra CA, Tatem AJ, Noor AM, Snow RW: The global distribution and population at risk of malaria: past, present, and future. The Lancet infectious diseases. 2004, 4 (6): 327-336. 10.1016/S1473-3099(04)01043-6.
Article
PubMed
PubMed Central
Google Scholar
Price RN, Tjitra E, Guerra CA, Yeung S, White NJ, Anstey NM: Vivax malaria: neglected and not benign. Am J Trop Med Hyg. 2007, 77 (6 Suppl): 79-87.
PubMed
PubMed Central
Google Scholar
Anstey NM, Russell B, Yeo TW, Price RN: The pathophysiology of vivax malaria. Trends in parasitology. 2009, 25 (5): 220-227. 10.1016/j.pt.2009.02.003.
Article
PubMed
CAS
Google Scholar
Menard D, Barnadas C, Bouchier C, Henry-Halldin C, Gray LR, Ratsimbasoa A, Thonier V, Carod JF, Domarle O, Colin Y, Bertrand O, Picot J, King CL, Grimberg BT, Mercereau-Puijalon O, Zimmerman PA: Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people. Proceedings of the National Academy of Sciences of the United States of America. 2010, 107 (13): 5967-5971. 10.1073/pnas.0912496107.
Article
PubMed
CAS
PubMed Central
Google Scholar
Cui L, Escalante AA, Imwong M, Snounou G: The genetic diversity of Plasmodium vivax populations. Trends in parasitology. 2003, 19 (5): 220-226. 10.1016/S1471-4922(03)00085-0.
Article
PubMed
CAS
Google Scholar
Leclerc MC, Durand P, Gauthier C, Patot S, Billotte N, Menegon M, Severini C, Ayala FJ, Renaud F: Meager genetic variability of the human malaria agent Plasmodium vivax. Proc Natl Acad Sci USA. 2004, 101 (40): 14455-14460. 10.1073/pnas.0405186101.
Article
PubMed
CAS
PubMed Central
Google Scholar
Imwong M, Nair S, Pukrittayakamee S, Sudimack D, Williams JT, Mayxay M, Newton PN, Kim JR, Nandy A, Osorio L, Carlton JM, White NJ, Day NP, Anderson TJ: Contrasting genetic structure in Plasmodium vivax populations from Asia and South America. Int J Parasitol. 2007, 37 (8-9): 1013-1022. 10.1016/j.ijpara.2007.02.010.
Article
PubMed
CAS
Google Scholar
Karunaweera ND, Ferreira MU, Munasinghe A, Barnwell JW, Collins WE, King CL, Kawamoto F, Hartl DL, Wirth DF: Extensive microsatellite diversity in the human malaria parasite Plasmodium vivax. Gene. 2008, 410 (1): 105-112. 10.1016/j.gene.2007.11.022.
Article
PubMed
CAS
Google Scholar
Ferreira MU, Karunaweera ND, da Silva-Nunes M, da Silva NS, Wirth DF, Hartl DL: Population structure and transmission dynamics of Plasmodium vivax in rural Amazonia. J Infect Dis. 2007, 195 (8): 1218-1226. 10.1086/512685.
Article
PubMed
Google Scholar
Orjuela-Sanchez P, Da Silva-Nunes M, Da Silva NS, Scopel KK, Goncalves RM, Malafronte RS, Ferreira MU: Population dynamics of genetically diverse Plasmodium falciparum lineages: community-based prospective study in rural Amazonia. Parasitology. 2009, 136 (10): 1097-1105. 10.1017/S0031182009990539.
Article
PubMed
CAS
PubMed Central
Google Scholar
Escalante AA, Cornejo OE, Freeland DE, Poe AC, Durrego E, Collins WE, Lal AA: A monkey's tale: the origin of Plasmodium vivax as a human malaria parasite. Proceedings of the National Academy of Sciences of the United States of America. 2005, 102 (6): 1980-1985. 10.1073/pnas.0409652102.
Article
PubMed
CAS
PubMed Central
Google Scholar
Mu J, Joy DA, Duan J, Huang Y, Carlton J, Walker J, Barnwell J, Beerli P, Charleston MA, Pybus OG, Su XZ: Host switch leads to emergence of Plasmodium vivax malaria in humans. Mol Biol Evol. 2005, 22 (8): 1686-1693. 10.1093/molbev/msi160.
Article
PubMed
CAS
Google Scholar
Jongwutiwes S, Putaporntip C, Iwasaki T, Ferreira MU, Kanbara H, Hughes AL: Mitochondrial genome sequences support ancient population expansion in Plasmodium vivax. Mol Biol Evol. 2005, 22 (8): 1733-1739. 10.1093/molbev/msi168.
Article
PubMed
CAS
PubMed Central
Google Scholar
Cornejo OE, Escalante AA: The origin and age of Plasmodium vivax. Trends Parasitol. 2006, 22 (12): 558-563. 10.1016/j.pt.2006.09.007.
Article
PubMed
PubMed Central
Google Scholar
Feng X, Carlton JM, Joy DA, Mu J, Furuya T, Suh BB, Wang Y, Barnwell JW, Su XZ: Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. Proceedings of the National Academy of Sciences of the United States of America. 2003, 100 (14): 8502-8507. 10.1073/pnas.1232502100.
Article
PubMed
CAS
PubMed Central
Google Scholar
Joy DA, Gonzalez-Ceron L, Carlton JM, Gueye A, Fay M, McCutchan TF, Su XZ: Local adaptation and vector-mediated population structure in Plasmodium vivax malaria. Molecular biology and evolution. 2008, 25 (6): 1245-1252. 10.1093/molbev/msn073.
Article
PubMed
CAS
PubMed Central
Google Scholar
Garnham PCC: Malaria parasites of man: life-cycles and morphology. Malaria:Principles and Practice of Malariology. Edited by: Wernsdorfer WH, Sir McGregor I. 1988, London: Churchill Livingstone, 61-96.
Google Scholar
Xu BL, Su YP, Shang LY, Zhang HW: Malaria control in Henan Province, People's Republic of China. The American journal of tropical medicine and hygiene. 2006, 74 (4): 564-567.
PubMed
Google Scholar
Park JW, Jun G, Yeom JS: Plasmodium vivax malaria: status in the Republic of Korea following reemergence. Korean J Parasitol. 2009, S39-50. 47 Suppl
Yang Z, Miao J, Huang Y, Li X, Putaporntip C, Jongwutiwes S, Gao Q, Udomsangpetch R, Sattabongkot J, Cui L: Genetic structures of geographically distinct Plasmodium vivax populations assessed by PCR/RFLP analysis of the merozoite surface protein 3beta gene. Acta tropica. 2006, 100 (3): 205-212. 10.1016/j.actatropica.2006.10.011.
Article
PubMed
CAS
PubMed Central
Google Scholar
Conway DJ: Tracing the dawn of Plasmodium falciparum with mitochondrial genome sequences. Trends Genet. 2003, 19 (12): 671-674. 10.1016/j.tig.2003.10.007.
Article
PubMed
CAS
Google Scholar
Perkins SL: Molecular systematics of the three mitochondrial protein-coding genes of malaria parasites: corroborative and new evidence for the origins of human malaria. Mitochondrial DNA. 2008, 19 (6): 471-478.
Article
PubMed
CAS
Google Scholar
Joy DA, Feng X, Mu J, Furuya T, Chotivanich K, Krettli AU, Ho M, Wang A, White NJ, Suh E, Beerli P, Su XZ: Early origin and recent expansion of Plasmodium falciparum. Science (New York, NY. 2003, 300 (5617): 318-321. 10.1126/science.1081449.
Article
CAS
Google Scholar
Miao M, Yang Z, Cui L, Ahlum J, Huang Y, Cui L: Different allele prevalence in the dihydrofolate reductase and dihydropteroate synthase genes in Plasmodium vivax populations from China. The American journal of tropical medicine and hygiene. 2010, 83 (6): 1206-1211. 10.4269/ajtmh.2010.10-0259.
Article
PubMed
CAS
PubMed Central
Google Scholar
Zhong D, Bonizzoni M, Zhou G, Wang G, Chen B, Vardo-Zalik A, Cui L, Yan G, Zheng B: Genetic diversity of Plasmodium vivax malaria in China and Myanmar. Infect Genet Evol. 2011, 11 (6): 1419-1425. 10.1016/j.meegid.2011.05.009.
Article
PubMed
CAS
PubMed Central
Google Scholar
Cui L, Yan G, Sattabongkot J, Cao Y, Chen B, Chen X, Fan Q, Fang Q, Jongwutiwes S, Parker D, Sirichaisinthop J, Kyaw MP, Su XZ, Yang H, Yang Z, Wang B, Xu J, Zheng B, Zhong D, Zhou G: Malaria in the Greater Mekong Subregion: Heterogeneity and complexity. Acta tropica. 2011
Google Scholar
Ewing B, Green P: Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8 (3): 186-194.
Article
PubMed
CAS
Google Scholar
Ewing B, Hillier L, Wendl MC, Green P: Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8 (3): 175-185.
Article
PubMed
CAS
Google Scholar
Nickerson DA, Tobe VO, Taylor SL: PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res. 1997, 25 (14): 2745-2751. 10.1093/nar/25.14.2745.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gordon D, Abajian C, Green P: Consed: a graphical tool for sequence finishing. Genome Res. 1998, 8 (3): 195-202.
Article
PubMed
CAS
Google Scholar
Librado P, Rozas J: DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009, 25 (11): 1451-1452. 10.1093/bioinformatics/btp187.
Article
PubMed
CAS
Google Scholar
Qi J, Zhao F, Buboltz A, Schuster SC: inGAP: an integrated next-generation genome analysis pipeline. Bioinformatics. 2009, 26 (1): 127-129.
Article
PubMed
PubMed Central
Google Scholar
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22 (22): 4673-4680. 10.1093/nar/22.22.4673.
Article
PubMed
CAS
PubMed Central
Google Scholar
Clement M, Posada D, Crandall KA: TCS: a computer program to estimate gene genealogies. Mol Ecol. 2000, 9 (10): 1657-1659. 10.1046/j.1365-294x.2000.01020.x.
Article
PubMed
CAS
Google Scholar
Pfenninger M, Posada D: Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution. 2002, 56 (9): 1776-1788.
Article
PubMed
Google Scholar
Pritchard JK, Stephens M, Donnelly P: Inference of population structure using multilocus genotype data. Genetics. 2000, 155 (2): 945-959.
PubMed
CAS
PubMed Central
Google Scholar
Evanno G, Regnaut S, Goudet J: Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005, 14 (8): 2611-2620. 10.1111/j.1365-294X.2005.02553.x.
Article
PubMed
CAS
Google Scholar
Excoffier L, Laval G, Schneider S: Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol Bioinform Online. 2005, 1: 47-50.
CAS
PubMed Central
Google Scholar
Tajima F: Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 1989, 123 (3): 585-595.
PubMed
CAS
PubMed Central
Google Scholar
Fu YX: Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 1997, 147 (2): 915-925.
PubMed
CAS
PubMed Central
Google Scholar
Rogers AR, Harpending H: Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol. 1992, 9 (3): 552-569.
PubMed
CAS
Google Scholar
Walker MJ, Stockman AK, Marek PE, Bond JE: Pleistocene glacial refugia across the Appalachian Mountains and coastal plain in the millipede genus Narceus: evidence from population genetic, phylogeographic, and paleoclimatic data. BMC Evol Biol. 2009, 9: 25-10.1186/1471-2148-9-25.
Article
PubMed
PubMed Central
Google Scholar
Slatkin M, Hudson RR: Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics. 1991, 129 (2): 555-562.
PubMed
CAS
PubMed Central
Google Scholar
Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
Article
PubMed
PubMed Central
Google Scholar
Iwagami M, Hwang SY, Fukumoto M, Hayakawa T, Tanabe K, Kim SH, Kho WG, Kano S: Geographical origin of Plasmodium vivax in the Republic of Korea: haplotype network analysis based on the parasite's mitochondrial genome. Malaria journal. 2010, 9: 184-10.1186/1475-2875-9-184.
Article
PubMed
PubMed Central
Google Scholar
Fay JC, Wu CI: A human population bottleneck can account for the discordance between patterns of mitochondrial versus nuclear DNA variation. Mol Biol Evol. 1999, 16 (7): 1003-1005.
Article
PubMed
CAS
Google Scholar
Tajima F: The effect of change in population size on DNA polymorphism. Genetics. 1989, 123 (3): 597-601.
PubMed
CAS
PubMed Central
Google Scholar
Ricklefs RE, Outlaw DC: A molecular clock for malaria parasites. Science (New York, NY. 2010, 329 (5988): 226-229. 10.1126/science.1188954.
Article
CAS
Google Scholar
Nicolaiev BP: Subspecies of the parasite of tertian malaria (Plasmodium vivax). Dokl Akad Nauk (USSR). 1949, 67: 201-210.
Google Scholar
Li J, Collins WE, Wirtz RA, Rathore D, Lal A, McCutchan TF: Geographic subdivision of the range of the malaria parasite Plasmodium vivax. Emerging infectious diseases. 2001, 7 (1): 35-42. 10.3201/eid0701.010105.
Article
PubMed
CAS
PubMed Central
Google Scholar
Walton C, Handley JM, Tun-Lin W, Collins FH, Harbach RE, Baimai V, Butlin RK: Population structure and population history of Anopheles dirus mosquitoes in Southeast Asia. Mol Biol Evol. 2000, 17 (6): 962-974.
Article
PubMed
CAS
Google Scholar
Lee HJ, Boulding EG: Mitochondrial DNA variation in space and time in the northeastern Pacific gastropod, Littorina keenae. Mol Ecol. 2007, 16 (15): 3084-3103. 10.1111/j.1365-294X.2007.03364.x.
Article
PubMed
CAS
Google Scholar
Zhang DX, Hewitt GM: Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol Ecol. 2003, 12 (3): 563-584. 10.1046/j.1365-294X.2003.01773.x.
Article
PubMed
CAS
Google Scholar
Ballard JW, Whitlock MC: The incomplete natural history of mitochondria. Mol Ecol. 2004, 13 (4): 729-744. 10.1046/j.1365-294X.2003.02063.x.
Article
PubMed
Google Scholar
Gunawardena S, Karunaweera ND, Ferreira MU, Phone-Kyaw M, Pollack RJ, Alifrangis M, Rajakaruna RS, Konradsen F, Amerasinghe PH, Schousboe ML, Galappaththy GN, Abeyasinghe RR, Hartl DL, Wirth DF: Geographic structure of Plasmodium vivax: microsatellite analysis of parasite populations from Sri Lanka, Myanmar, and Ethiopia. Am J Trop Med Hyg. 2010, 82 (2): 235-242. 10.4269/ajtmh.2010.09-0588.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gunasekera AM, Wickramarachchi T, Neafsey DE, Ganguli I, Perera L, Premaratne PH, Hartl D, Handunnetti SM, Udagama-Randeniya PV, Wirth DF: Genetic diversity and selection at the Plasmodium vivax apical membrane antigen-1 (PvAMA-1) locus in a Sri Lankan population. Molecular biology and evolution. 2007, 24 (4): 939-947. 10.1093/molbev/msm013.
Article
PubMed
CAS
Google Scholar
Putaporntip C, Jongwutiwes S, Sakihama N, Ferreira MU, Kho WG, Kaneko A, Kanbara H, Hattori T, Tanabe K: Mosaic organization and heterogeneity in frequency of allelic recombination of the Plasmodium vivax merozoite surface protein-1 locus. Proceedings of the National Academy of Sciences of the United States of America. 2002, 99 (25): 16348-16353. 10.1073/pnas.252348999.
Article
PubMed
CAS
PubMed Central
Google Scholar
Moon SU, Lee HW, Kim JY, Na BK, Cho SH, Lin K, Sohn WM, Kim TS: High frequency of genetic diversity of Plasmodium vivax field isolates in Myanmar. Acta Trop. 2009, 109 (1): 30-36. 10.1016/j.actatropica.2008.09.006.
Article
PubMed
CAS
Google Scholar
Yip K: Antimalarial work in China: a historical perspective. Parassitologia. 1998, 40 (1-2): 29-38.
PubMed
CAS
Google Scholar
Sheng HF, Zhou SS, Gu ZC, Zheng X: [Malaria situation in the People's Republic of China in 2002]. Zhongguo ji sheng chong xue yu ji sheng chong bing za zhi = Chinese journal of parasitology & parasitic diseases. 2003, 21 (4): 193-196.
Google Scholar
Jongwutiwes S, Putaporntip C, Hughes AL: Bottleneck effects on vaccine-candidate antigen diversity of malaria parasites in Thailand. Vaccine. 2010, 28 (18): 3112-3117. 10.1016/j.vaccine.2010.02.062.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wright S: Isolation by Distance. Genetics. 1943, 28 (2): 114-138.
PubMed
CAS
PubMed Central
Google Scholar
Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, Day KP: Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol Biol Evol. 2000, 17 (10): 1467-1482.
Article
PubMed
CAS
Google Scholar
Hernandez-Vera G, Mitrovic M, Jovic J, Tosevski I, Caldara R, Gassmann A, Emerson BC: Host-associated genetic differentiation in a seed parasitic weevil Rhinusa antirrhini (Coleptera: Curculionidae) revealed by mitochondrial and nuclear sequence data. Mol Ecol. 19 (11): 2286-2300.
Hwang SY, Kim SH, Kho WG: Genetic characteristics of polymorphic antigenic markers among Korean isolates of Plasmodium vivax. Korean J Parasitol. 2009, S51-58. 47 Suppl
White NJ: Determinants of relapse periodicity in Plasmodium vivax malaria. Malaria journal. 2011, 10 (1): 297-10.1186/1475-2875-10-297.
Article
PubMed
PubMed Central
Google Scholar
Orjuela-Sanchez P, Karunaweera ND, da Silva-Nunes M, da Silva NS, Scopel KK, Goncalves RM, Amaratunga C, Sa JM, Socheat D, Fairhust RM, Gunawardena S, Thavakodirasah T, Galapaththy GL, Abeysinghe R, Kawamoto F, Wirth DF, Ferreira MU: Single-nucleotide polymorphism, linkage disequilibrium and geographic structure in the malaria parasite Plasmodium vivax: prospects for genome-wide association studies. BMC Genet. 2010, 11: 65-
Article
PubMed
PubMed Central
Google Scholar
Culleton R, Coban C, Zeyrek FY, Cravo P, Kaneko A, Randrianarivelojosia M, Andrianaranjaka V, Kano S, Farnert A, Arez AP, Sharp PM, Carter R, Tanabe K: The Origins of African Plasmodium vivax; Insights from Mitochondrial Genome Sequencing. PLoS One. 2011, 6 (12): e29137-10.1371/journal.pone.0029137.
Article
PubMed
CAS
PubMed Central
Google Scholar
Yang BL, Wan WJ, Wang WR, Hu HX, Li HX, Li XL, Li CZ, Huang GZ: [Experimental studies on the biological characteristics of Plasmodium vivax in south Yunnan]. Ji sheng chong xue yu ji sheng chong bing za zhi = Journal of parasitology & parasitic diseases. 1986, 4 (2): 101-105.
CAS
Google Scholar