Paulsen IT, Saier M: A Novel Family of Ubiquitous Heavy Metal Ion Transport Proteins. J Membrane Biol. 1997, 156: 99-103. 10.1007/s002329900192.
Article
CAS
Google Scholar
Maser P, Thomine S, Schroeder JI, Ward JM, Hirschi K, Sze H, Talke IN, Amtmann A, Maathuis FJ, Sanders D, Harper JF, Tchieu J, Gribskov M, Persans MW, Salt DE, Kim SA, Guerinot ML: Phylogenetic relationships within cation transporter families of Arabidopsis. Plant Physiol. 2001, 126: 1646-1667. 10.1104/pp.126.4.1646.
Article
CAS
PubMed
PubMed Central
Google Scholar
Palmiter RD, Huang LP: Efflux and compartmentalization of zinc by members of the SLC30 family of solute carriers. Pflugers Archiv-European J Physiology. 2004, 447: 744-751. 10.1007/s00424-003-1070-7.
Article
CAS
Google Scholar
Haney CJ, Grass G, Franke S, Rensing C: New developments in the understanding of the cation diffusion facilitator family. J Ind Microbiol Biotechnol. 2005, 32: 215-226. 10.1007/s10295-005-0224-3.
Article
CAS
PubMed
Google Scholar
Kramer U, Talke IN, Hanikenne M: Transition metal transport. FEBS Letters. 2007, 581: 2263-2272. 10.1016/j.febslet.2007.04.010.
Article
PubMed
Google Scholar
Kobayashi S, Miyabe S, Izawa S, Inoue Y, Kimura A: Correlation of the OSR/ZRCI gene product and the intracellular glutathione levels in Saccharomyces cerevisiae. Biotechnol Appl Biochem. 1996, 23: 3-6.
CAS
PubMed
Google Scholar
Bruinsma J, Jirakulaporn T, Muslin A, Kornfeld K: Zinc ions and cation diffusion facilitator proteins regulate Ras-mediated signaling. Developmental Cell. 2002, 2: 567-578. 10.1016/S1534-5807(02)00151-X.
Article
CAS
PubMed
Google Scholar
Ellis CD, Wang FD, MacDiarmid CW, Clark S, Lyons T, Eide DJ: Zinc and the Msc2 zinc transporter protein are required for endoplasmic reticulum function. Journal of Cell Biology. 2004, 166: 325-335. 10.1083/jcb.200401157.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gaither LA, Eide DJ: Eukaryotic zinc transporters and their regulation. Biometals. 2001, 14: 251-270. 10.1023/A:1012988914300.
Article
CAS
PubMed
Google Scholar
Blaudez D, Kohler A, Martin F, Sanders D, Chalot M: Poplar metal tolerance protein 1 confers zinc tolerance and is an oligomeric vacuolar zinc transporter with an essential leucine zipper motif. Plant Cell. 2003, 15: 2911-2928. 10.1105/tpc.017541.
Article
CAS
PubMed
PubMed Central
Google Scholar
Montanini B, Blaudez D, Jeandroz S, Sanders D, Chalot M: Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity. BMC Genomics. 2007, 8: 107-10.1186/1471-2164-8-107.
Article
PubMed
PubMed Central
Google Scholar
Migeon A, Blaudez D, Wilkins O, Montanini B, Campbell MM, Richaud P, Sebastien T, Chalot M: Genome-wide analysis of plant metal transporters with an emphasis on poplar. Cell Mol Life Sci. 2010, 67: 3763-3784. 10.1007/s00018-010-0445-0.
Article
CAS
PubMed
Google Scholar
Eisen JA, Fraser CM: Phylogenomics: Intersection of Evolution and Genomics. Science. 2003, 300: 1706-1707. 10.1126/science.1086292.
Article
CAS
PubMed
Google Scholar
Eisen JA: Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutionary Analysis. Genome Res. 1998, 8: 163-167.
Article
CAS
PubMed
Google Scholar
Cannon SB, Sterck L, et al: Legume evolution viewed through the Medicago truncatula and Lotus japonicus genomes. PNAS. 2006, 103: 14959-64. 10.1073/pnas.0603228103.
Article
CAS
PubMed
PubMed Central
Google Scholar
Paterson AH, Bowers JE, et al: The Sorghum bicolor genome and the diversification of grasses. Nature. 2009, 457: 551-556. 10.1038/nature07723.
Article
CAS
PubMed
Google Scholar
AGI: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 2000, 408: 796-815. 10.1038/35048692.
Article
Google Scholar
Goff SA, Ricke D, Lan TH, et al: A Draft Sequence of the Rice Genome. (Oryza sativa L. ssp, japonica) Science. 2002, 296: 92-100.
CAS
PubMed
Google Scholar
Yu J, Hu S, Wang J, et al: A Draft Sequence of the Rice Genome (Oryza sativa L ssp indica). Science. 2002, 296: 79-92. 10.1126/science.1068037.
Article
CAS
PubMed
Google Scholar
Matsuzaki M, Misumi O, Shin-i T, et al: Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature. 2004, 428: 653-657. 10.1038/nature02398.
Article
CAS
PubMed
Google Scholar
Derelle E, Ferraz C, Rombauts S, et al: Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci USA. 2006, 103: 11647-11652. 10.1073/pnas.0604795103.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tuskan GA, DiFazio S, Jansson S, et al: The Genome of Black Cottonwood, Populus trichocarpa (Torr & Gray). Science. 2006, 313: 1596-1604. 10.1126/science.1128691.
Article
CAS
PubMed
Google Scholar
Merchant SS, Prochnik SE, Vallon O, et al: The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions. Science. 2007, 318: 245-250. 10.1126/science.1143609.
Article
CAS
PubMed
PubMed Central
Google Scholar
Palenik B, Grimwood J, Aerts A, et al: The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci USA. 2007, 104: 7705-7710. 10.1073/pnas.0611046104.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rensing SA, Lang D, et al: The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants. Science. 2007, 319: 64-69. 10.1126/science.1150646.
Article
PubMed
Google Scholar
Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D: A Molecular Timeline for the Origin of Photosynthetic Eukaryotes. Mol Biol Evol. 2004, 21: 809-818. 10.1093/molbev/msh075.
Article
CAS
PubMed
Google Scholar
Courties CA, Vaquer A, et al: Smallest eukaryotic organism. Nature. 1994, 370: 255-10.1038/370255a0.
Article
Google Scholar
Chretiennot-Dinet M, Courties C, Vaquer A: A new marine picoeukaryote: Ostreococcus tauri. gen et sp Nov (Chlorophyta, Prasinophyceae). Phycologia. 1995, 4: 285-292. 10.2216/i0031-8884-34-4-285.1.
Article
Google Scholar
Courties C, Perasso R, Chretiennot-Dinet M, Gouy M, Guillou L, Troussellier M: Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyat, Prasinophyceae). Journal of Phycology. 1998, 34: 844-849. 10.1046/j.1529-8817.1998.340844.x.
Article
CAS
Google Scholar
Hedges SB: The origin and evolution of model organisms. Nat Rev Genet. 2002, 3: 838-849. 10.1038/nrg929.
Article
CAS
PubMed
Google Scholar
Raubeson LA, Jansen RK: Chloroplast DNA Evidence on the Ancient Evolutionary Split in Vascular Land Plants. Science. 1992, 255: 1697-1699. 10.1126/science.255.5052.1697.
Article
CAS
PubMed
Google Scholar
Kenrick P, Crane PR: The origin and early evolution of plants on land. Nature. 1997, 389: 33-39. 10.1038/37918.
Article
CAS
Google Scholar
Doyle JA: Phylogeny of vascular plants. An Rev Ecology and Systematics. 1998, 29: 567-599. 10.1146/annurev.ecolsys.29.1.567.
Article
Google Scholar
Nickrent DL, Parkinson CL, Palmer JD, Duff RJ: Multigene Phylogeny of Land Plants with Special Reference to Bryophytes and the Earliest Land Plants. Mol Biol Evol. 2000, 17: 1885-1895.
Article
CAS
PubMed
Google Scholar
Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD: Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature. 2001, 409: 618-622. 10.1038/35054555.
Article
CAS
PubMed
Google Scholar
Wolfe KH, Gouy M, Yang YW, Sharp PM, Li WH: Date of the Monocot--Dicot Divergence Estimated from Chloroplast DNA Sequence Data. Proc Natl Acad Sci USA. 1989, 86: 6201-6205. 10.1073/pnas.86.16.6201.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang H, Moore MJ, et al: Rosid radiation and the rapid rise of angiosperm-dominated forests. PNAS. 2009, 10: 3853-3858. 10.1073/pnas.0813376106.
Article
Google Scholar
Bell CD, Soltis DE, Soltis PS: The age and diversification of the angiosperms re-revisited. Am J Bot. 2010, 97: 1296-1303. 10.3732/ajb.0900346.
Article
PubMed
Google Scholar
Hanikenne M, Kramer U, Demoulin V, Baurain D: A comparative inventory of metal transporters in the green alga Chlamydomonas reinhardtii and the red alga Cyanidioschizon merolae. Plant Physiol. 2005, 137: 428-446. 10.1104/pp.104.054189.
Article
CAS
PubMed
PubMed Central
Google Scholar
Moore RC, Purugganan MD: The evolutionary dynamics of plant duplicate genes. Current Opinion in Plant Biology. 2005, 8: 122-128. 10.1016/j.pbi.2004.12.001.
Article
CAS
PubMed
Google Scholar
Arrivault S, Senger T, Kramer U: The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply. Plant J. 2006, 46: 861-879. 10.1111/j.1365-313X.2006.02746.x.
Article
CAS
PubMed
Google Scholar
van der Zaal BJ, Neuteboom LW, Pinas JE, Chardonnens AN, Schat H, Verkleij JAC, Hooykaas PJ: Overexpression of a novel Arabidopsis gene related to putative zinc-transporter genes from animals can lead to enhanced zinc resistance and accumulation. Plant Physiol. 1999, 119: 1047-1055. 10.1104/pp.119.3.1047.
Article
CAS
PubMed
PubMed Central
Google Scholar
Desbrosses-Fonrouge AG, Voigt K, Schroder A, Arrivault S, Thomine S, Kramer U: Arabidopsis thaliana MTP1 is a Zn transporter in the vacuolar membrane which mediates Zn detoxification and drives leaf Zn accumulation. FEBS Lett. 2005, 579: 4165-4174. 10.1016/j.febslet.2005.06.046.
Article
CAS
PubMed
Google Scholar
Drager DB, Desbrosses-Fonrouge AG, Krach C, Chardonnens AN, Meyer RC, Saumitou-Laprade P, Kramer U: Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels. Plant J. 2004, 39: 425-439. 10.1111/j.1365-313X.2004.02143.x.
Article
PubMed
Google Scholar
Kim D, Gustin JL, Lahner B, Persans MW, Baek D, Yun DJ, Salt DE: The plant CDF family member TgMTP1 from the Ni/Zn hyperaccumulator Thlaspi goesingense acts to enhance efflux of Zn at the plasma membrane when expressed in Saccharomyces cerevisiae. Plant J. 2004, 39: 237-251. 10.1111/j.1365-313X.2004.02126.x.
Article
CAS
PubMed
Google Scholar
Kobae Y, Uemura T, Sato MH, Ohnishi M, Mimura T, Nakagawa T, Maeshima M: Zinc transporter of Arabidopsis thaliana AtMTP1 is localized to vacuolar membranes and implicated in zinc homeostasis. Plant Cell Physiol. 2004, 45: 1749-1758. 10.1093/pcp/pci015.
Article
CAS
PubMed
Google Scholar
Muthukumar B, Yakubov B, Salt DE: Transcriptional activation and localization of expression of Brassica juncea putative metal transport protein BjMTP1. BMC Plant Biology. 2007, 7: 32-10.1186/1471-2229-7-32.
Article
PubMed
PubMed Central
Google Scholar
Grennan AK: Genevestigator. Facilitating Web-Based Gene-Expression Analysis. Plant Physiol. 2006, 141: 1164-1166. 10.1104/pp.104.900198.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lyons E, Freeling M: How to usefully compare homologous plant genes and chromosomes as DNA sequences. Plant J. 2008, 53: 661-673. 10.1111/j.1365-313X.2007.03326.x.
Article
CAS
PubMed
Google Scholar
Delhaize E, Kataoka T, Hebb DM, White RG, Ryan PR: Genes encoding proteins of the cation diffusion facilitator family that confer manganese tolerance. Plant Cell. 2003, 15: 1131-1142. 10.1105/tpc.009134.
Article
CAS
PubMed
PubMed Central
Google Scholar
Delhaize E, Gruber B, Pittman J, White R, Leung H, Miao Y, Jiang L, Ryan P, Richardson A: A role for the AtMTP11 gene of Arabidopsis in manganese transport and tolerance. Plant J. 2007, 51: 198-210. 10.1111/j.1365-313X.2007.03138.x.
Article
CAS
PubMed
Google Scholar
Peiter E, Montanini B, Gobert A, Pedas P, Husted S, Maathuis FJM, Blaudez D, Chalot M, Sanders D: A secretory pathway-localized cation diffusion facilitator confers plant manganese tolerance. Proc Natl Acad Sci USA. 2007, 104: 8532-8537. 10.1073/pnas.0609507104.
Article
CAS
PubMed
PubMed Central
Google Scholar
Baxter I, Ouzzani M, Orcun S, Kennedy B, Jandhyala SS, Salt DE: Purdue Ionomics Information Management System (PIIMS). An Integrated Functional Genomics Platform. Plant Physiol. 2006, 143: 600-611. 10.1104/pp.106.092528.
Article
PubMed
Google Scholar
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.
Article
CAS
PubMed
PubMed Central
Google Scholar
Schaffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF: Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucl Acids Res. 2001, 29: 2994-3005. 10.1093/nar/29.14.2994.
Article
CAS
PubMed
PubMed Central
Google Scholar
Thompson JD, Higgins DG, Gibson TJ: "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.". Nucleic Acids Res. 1994, 22: 4673-4680. 10.1093/nar/22.22.4673.
Article
CAS
PubMed
PubMed Central
Google Scholar
Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP: Bayesian inference of phylogeny and its impact on evolutionary biology. Science. 2001, 294: 2310-2314. 10.1126/science.1065889.
Article
CAS
PubMed
Google Scholar
Ronquist F, Huelsenbeck JP: MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003, 19: 1572-1574. 10.1093/bioinformatics/btg180.
Article
CAS
PubMed
Google Scholar
Letunic I, Bork P: Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 2007, 23: 127-8. 10.1093/bioinformatics/btl529.
Article
CAS
PubMed
Google Scholar
Edgar RC: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32: 1792-1797. 10.1093/nar/gkh340.
Article
CAS
PubMed
PubMed Central
Google Scholar
Katoh T: Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics. 2008, 9: 286-298. 10.1093/bib/bbn013.
Article
CAS
PubMed
Google Scholar
Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology. 2003, 52: 696-704. 10.1080/10635150390235520.
Article
PubMed
Google Scholar