Suyama Y, Kawamuro K, Kinoshita I, Yoshimura K, Tsumura Y, Takahara H: DNA sequence from a fossil pollen of Abies spp. from Pleistocene peat. Genes Genet Syst. 1996, 71 (3): 145-149. 10.1266/ggs.71.145.
Article
CAS
PubMed
Google Scholar
Poinar HN, Hofreiter M, Spaulding WG, Martin PS, Stankiewicz BA, Bland H, Evershed RP, Possnert G, Pääbo S: Molecular coproscopy: Dung and diet of the extinct ground sloth Nothrotheriops shastensis. Science. 1998, 281: 402-406. 10.1126/science.281.5375.402.
Article
CAS
PubMed
Google Scholar
Dumolin-Lapègue S, Pemonge MH, Gielly L, Taberlet P, Petit RJ: Amplification of oak DNA from ancient and modern wood. Molecular Ecology. 1999, 8: 2137-2140.
Article
PubMed
Google Scholar
Küch M, Rohland N, Betancourt JL, Latorre C, Steppan S, Poinar HN: Molecular analysis of a 11700-year-old rodent midden from the Atacama Desert, Chile. Molecular Ecology. 2002, 11: 913-924.
Article
PubMed
Google Scholar
Höss M, Jaruga P, Zastawny TH, Dizdaroglu M, Pääbo S: DNA damage and DNA sequence retrieval from ancient tissues. Nucleic Acids Research. 1996, 24: 1304-1307.
Article
PubMed
PubMed Central
Google Scholar
Coolen MJL, Boere A, Abbas B, Baas M, Wakeham SG, Sinninghe Damsté JS: Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea. Paleoceanography. 2006, 21: 10.1029/2005PA001188. PA1005,
Google Scholar
Parducci L, Suyama Y, Lascoux M, Bennett KD: Ancient DNA from pollen: a genetic record of population history in Scots pine. Molecular Ecology. 2005, 14: 2873-82. 10.1111/j.1365-294X.2005.02644.x.
Article
CAS
PubMed
Google Scholar
Lia VV, Confalonieri VA, Ratto N, Hernández JAC, Alzogaray AMM, Poggio L, Brown TA: Microsatellite typing of ancient maize: insights into the history of agriculture in southern South America. Proceedings of the Royal Society London B. 2007, 274: 545-554. 10.1098/rspb.2006.3747.
Article
CAS
Google Scholar
Brown TA, Jones MK, Powell W, Allaby RG: The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology & Evolution. 2009, 24: 103-109.
Article
Google Scholar
Bennett KD, Parducci L: DNA from pollen: principles and potential. The Holocene. 2006, 16: 1031-1034. 10.1177/0959683606069383.
Article
Google Scholar
Provan J, Bennett KJ: Phylogeographic insights into cryptic glacial refugia. Trends in Ecology and Evolution. 2008, 23: 564-571. 10.1016/j.tree.2008.06.010.
Article
PubMed
Google Scholar
Davis MB, Shaw RG: Range Shifts and Adaptive Responses to Quaternary Climate Change. Science. 2001, 292: 673-679. 10.1126/science.292.5517.673.
Article
CAS
PubMed
Google Scholar
Leonard JA: Ancient DNA applications for wildlife conservation. Molecular Ecology. 2008, 17: 4186-4196. 10.1111/j.1365-294X.2008.03891.x.
Article
CAS
PubMed
Google Scholar
Hofreiter M: Long DNA sequences and large data sets: investigating the Quaternary via ancient DNA. Quaternary Science Reviews. 2008, 27: 2586-2592. 10.1016/j.quascirev.2008.09.012.
Article
Google Scholar
Rohland N, Malaspinas AS, Pollack JL, Slatkin M, Matheus P, Hofreiter M: Proboscidean mitogenomics: chronology and mode of elephant evolution using Mastodon as outgroup. PLoS Biology. 2007, 5: e207-10.1371/journal.pbio.0050207.
Article
PubMed
PubMed Central
Google Scholar
Barnes I, Matheus P, Shapiro B, Jensen D, Cooper A: Dynamics of Pleistocene population extinctions in Beringian brown bears. Science. 2002, 295: 2267-2270. 10.1126/science.1067814.
Article
CAS
PubMed
Google Scholar
Valdiosera CE, García-Garitagoitia JL, Garcia N, Doadrio I, Thomas MG, Hänni C, Arsuaga JL, Barnes J, Hofreiter M, Orlando L, Götherström A: Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos). Proceedings of the National Academy of Sciences of the USA. 2008, 105: 5123-5128. 10.1073/pnas.0712223105.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liepelt S, Bialozyt R, Ziegenhagen B: Wind-dispersed pollen mediates postglacial gene flow among refugia. Proceedings of the National Academy of Sciences of the USA. 2002, 99: 14590-14594. 10.1073/pnas.212285399.
Article
CAS
PubMed
PubMed Central
Google Scholar
Paffetti D, Vettori C, Caramelli D, Vernesi C, Lari M, Paganelli A, Paule L, Giannini R: Unexpected presence of Fagus orientalis complex in Italy as inferred from 45,000-year-old DNA pollen samples from Venice lagoon. BMC Evolutionary Biology. 2007, 7 (Suppl 2): S6-10.1186/1471-2148-7-S2-S6.
Article
PubMed
PubMed Central
Google Scholar
Schlumbaum A, Tensen M, Jaenicke-Després V: Ancient plant DNA in archaeobotany. Vegetation History and Archaeobotany. 2008, 17: 233-244. 10.1007/s00334-007-0125-7.
Article
Google Scholar
Vendramin G, Anzidei M, Madaghiele A, Sperisen C, Bucci G: Chloroplast microsatellite analysis reveals the presence of population subdivision in Norway spruce (Picea abies K.). Genome. 2000, 43: 68-78. 10.1139/gen-43-1-68.
Article
CAS
PubMed
Google Scholar
Bucci G, Vendramin GG: Delineation of genetic zones in the European Norway spruce natural range: preliminary evidence. Molecular Ecology. 2000, 9: 923-934. 10.1046/j.1365-294x.2000.00946.x.
Article
CAS
PubMed
Google Scholar
Sperisen C, Büchler U, Gugerli F, Mátyás G, Geburek T, Vendramin GG: Tandem repeats in plant mitochondrial genomes: application to the analysis of population differentiation in the conifer Norway spruce. Molecular Ecology. 2001, 10: 257-263. 10.1046/j.1365-294X.2001.01180.x.
Article
CAS
PubMed
Google Scholar
Ravazzi C: Late Quaternary history of spruce in southern Europe. Review of Palaeobotany and Palynology. 2002, 120: 131-177. 10.1016/S0034-6667(01)00149-X.
Article
Google Scholar
Tollefsrud MM, Kissling R, Gugerli F, Johnsen O, Skrøppa T, Cheddadi R, Van der Knaap WO, Latałowa M, Terhürne-Berson R, Litt T, Geburek T, Brochmann C, Sperisen C: Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen. Molecular Ecology. 2008, 17: 4134-4150. 10.1111/j.1365-294X.2008.03893.x.
Article
CAS
PubMed
Google Scholar
Tollefsrud MM, Sonstebo JH, Brochmann C, Johnsen O, Skroppa T, Vendramin GG: Combined analysis of nuclear and mitochondrial markers provide new insight into the genetic structure of North European Picea abies. Heredity. 2009, 102: 549-562. 10.1038/hdy.2009.16.
Article
CAS
PubMed
Google Scholar
Fărcaş S, de Beaulieu J, Reille M, Coldea G, Diaconeasa B, Goeury C, Goslar T, Jull T: First 14C datings of Late Glacial and Holocene pollen sequences from Romanian Carpathes. Comptes Rendus de l'Académie des Sciences - Series III - Sciences de la Vie. 1999, 322: 799-807.
Google Scholar
Feurdean A, Wohlfarth B, Björkman L, Tantau I, Bennike O, Willis KJ, Farcas S, Robertsson AM: The influence of refugial population on Lateglacial and early Holocene vegetational changes in Romania. Review of Palaeobotany and Palynology. 2007, 145: 305-320. 10.1016/j.revpalbo.2006.12.004.
Article
Google Scholar
Willis K, Sümegi P, Braun M, Tóth A: Does soil change cause vegetation change or vica versa? A temporal perspective from Hungary. Ecology. 1997, 78: 740-750. 10.1890/0012-9658(1997)078[0740:DSCCVC]2.0.CO;2.
Article
Google Scholar
Magyari EK, Jakab G, Braun M, Buczkó K, Bálint M: High-resolution study of Late Glacial and Early Holocene tree line changes in the Southern Carpathian Mountains. Geophysical Research Abstracts. 2009, 11: 10549-
Google Scholar
Seppä H, Hicks S: Integration of modern and past pollen accumulation rate (PAR) records across the arctic tree-line: a method for more precise vegetation reconstructions. Quaternary Science Reviews. 2006, 25: 1501-1516.
Article
Google Scholar
Davis MB, Deevey E: Pollen accumulation rates: estimates from late-glacial sediment of Rogers Lake. Science. 1964, 145: 1293-1295. 10.1126/science.145.3638.1293.
Article
CAS
PubMed
Google Scholar
Bennett KD: Postglacial population expansion of forest trees in Norfolk, UK. Nature. 1983, 303: 164-167. 10.1038/303164a0.
Article
Google Scholar
Giesecke T, Fontana S: Revisiting pollen accumulation rates from Swedish lake sediments. The Holocene. 2008, 18: 293-305. 10.1177/0959683607086767.
Article
Google Scholar
Seppä H, Alenius T, Bradshaw RHW, Giesecke T, Heikkilä M, Muukkonen P: Invasion of Norway spruce (Picea abies) and the rise of the boreal ecosystem in Fennoscandia. Journal of Ecolog. 2009, 97: 629-640.
Article
Google Scholar
Anderson-Carpenter LL, McLachlan JS, Jackson ST, Kuch M, Lumibao CY, Poinar HN: Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics. BMC Evolutionary Biology. 2011, 11: 30-10.1186/1471-2148-11-30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Feurdean AN, Willis KJ, Astaloş C: Legacy of the past land-use changes and management on the 'natural' upland forest composition in the Apuseni Natural Park, Romania. The Holocene. 2009, 19: 967-981. 10.1177/0959683609337358.
Article
Google Scholar
Hewitt G: Some genetic consequences of ice ages, and their roles in divergence and speciation. Biological Journal of the Linnean Society. 1996, 58: 247-276.
Article
Google Scholar
Hewitt G: The genetic legacy of the Quaternary ice ages. Nature. 2000, 405: 907-913. 10.1038/35016000.
Article
CAS
PubMed
Google Scholar
Petit RJ, Aguinagalde I, de Beaulieu JL, Bittkau C, Brewer S, Cheddadi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Müller-Starck G, Demesure-Musch B, Palmé A, Martín JP, Rendell S, Vendramin GG: Glacial Refugia: Hotspots But Not Melting Pots of Genetic Diversity. Science. 2003, 300 (5625): 1563-5156. 10.1126/science.1083264.
Article
CAS
PubMed
Google Scholar
Magri D, Vendramin GG, Comps B, Dupanloup I, Geburek T, Gömöry D, Latałova M, Litt T, Paule L, Roure JM, Tantau I, van der Knaap WO, Petit RJ, de Beaulieu J-L: A new scenario for the quarternary history of European beech populations: paleobotanical evidence and genetic consequences. New Phytologist. 2006, 171: 199-221. 10.1111/j.1469-8137.2006.01740.x.
Article
CAS
PubMed
Google Scholar
Magyari EK, Braun M, Buczkó K, Kern Z, László P, Hubay K, Bálint M: Radiocarbon chronology of glacial lake sediments in the Retezat Mts (S Carpathians, Romania): a window to Lateglacial and Holocene climatic and palaeoenvironmental changes. Central European Geology. 2009, 52: 225-248. 10.1556/CEuGeol.52.2009.3-4.2.
Article
Google Scholar
Comps B, Gömöry , Letouzey D, Thiébaut B, Petit RJ: Diverging Trends Between Heterozygosity and Allelic Richness During Postglacial Colonization in the European Beech. Genetics. 2001, 157: 389-397.
CAS
PubMed
PubMed Central
Google Scholar
Nyárádi G: Flora şi vegetaţia Munţilor Retezat. 1958, Bucuresti, Editura Academiei Republicii Populare Române
Google Scholar
Grodzińska K, Godzik B, Frączek W, Badea O, Oszlányi J, Postelnicu D, Shparyk Y: Vegetation of the selected forest stands and land use in the Carpathian Mountains. Environmental Pollution. 2004, 130: 17-32.
Article
PubMed
Google Scholar
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM: Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437: 376-380.
CAS
PubMed
PubMed Central
Google Scholar
Stiller M, Knapp M, Stenzel U, Hofreiter M, Meyer M: Direct multiplex sequencing (DMPS) - a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA. Genome Research. 2009, 19: 1843-1848. 10.1101/gr.095760.109.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tinner W, Kaltenrieder P: Rapid responses of high-mountain vegetation to early Holocene environmental changes in the Swiss Alps. Journal of Ecology. 2005, 93: 936-947. 10.1111/j.1365-2745.2005.01023.x.
Article
Google Scholar
Heled J, Drummond A: Bayesian inference of population size history from multiple loci. BMC Evolutionary Biology. 2008, 8: 289-10.1186/1471-2148-8-289.
Article
PubMed
PubMed Central
Google Scholar
Jankovská V: Late glacial finds of Pinus cembra l. in the Lubovnianská kotlina Basin. Folia Geobotanica & Phytotaxonomica. 1984, 19: 323-325.
Article
Google Scholar
Jankovská V: Palaeoecology of Pinus cembra, Larix europaea and Picea excelsa in the Poprad part of Spišská kotlina Basin. Diverzita rastlinatva Slovenska, Zbornik zo VI. zjazdu SBS pri SAV. 1995, 6: 141-145.
Google Scholar
Navascués M, Emerson BC: Elevated substitution rate estimates from ancient DNA: model violation and bias of the Bayesian methods. Molecular Ecology. 2009, 18: 4390-4397.
Article
PubMed
Google Scholar
Reuther AU, Urdea P, Geiger C, Ivy-Ochs S, Niller HP, Kubik PW, Heine K: Late Pleistocene glacial chronology of the Pietrele Valley, Retezat Mountains, Southern Carpathians constrained by 10Be exposure ages and pedological investigations. Quaternary International. 2007, 164-165: 151-169. 10.1016/j.quaint.2006.10.011.
Article
Google Scholar
Pääbo S, Poinar H, Serre D, Jaenicke-Despres V, Hebler J, Rohland N, Kuch M, Krause J, Vigilant L, Hofreiter M: Genetic analyses from ancient DNA. Annual Review of Genetics. 2004, 38: 645-679.
Article
PubMed
Google Scholar
Tamura K, Dudley J, Nei M, Kumar S, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution. 2004, 24: 1596-1599. 10.1093/molbev/msm092.
Article
Google Scholar
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nei M: Molecular Evolutionary Genetics. 1987, New York, Columbia University Press
Google Scholar
Tajima F: Evolutionary relationship of DNA sequences in finite populations. Genetics. 1983, 105: 437-460.
CAS
PubMed
PubMed Central
Google Scholar
Hudson RR, Boos D, Kaplan NL: A statistical test for detecting population subdivision. Molecular Biology and Evolution. 1992, 9: 138-151.
CAS
PubMed
Google Scholar
Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R: DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 2003, 19: 2496-2497. 10.1093/bioinformatics/btg359.
Article
CAS
PubMed
Google Scholar
Huelsenbeck JP, Ronquist F: MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17: 754-755. 10.1093/bioinformatics/17.8.754.
Article
CAS
PubMed
Google Scholar
Posada D, Crandall KA: Modeltest: testing the model of DNA substitution. Bioinformatics. 1998, 14: 817-818. 10.1093/bioinformatics/14.9.817.
Article
CAS
PubMed
Google Scholar
Kimura M: Estimation of evolutionary distances between homologous nucleotide sequences. Proceedings of the National Academy of Sciences of the USA. 1981, 78: 454-458. 10.1073/pnas.78.1.454.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rambaut A: Figtree: Tree figure drawing tool version 1.2.1. Computer program, Accessed 21 January 2009, [http://tree.bio.ed.ac.uk/]
Felsenstein J: Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution. 1981, 17: 368-376. 10.1007/BF01734359.
Article
CAS
PubMed
Google Scholar
Hasegawa M, Kishino K, Yano T: Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution. 1985, 22: 160-174. 10.1007/BF02101694.
Article
CAS
PubMed
Google Scholar
Bandelt HJ, Forster P, Röhl A: Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution. 1999, 16: 37-48.
Article
CAS
PubMed
Google Scholar
Comments
View archived comments (1)