Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J: Biodiversity hotspots for conservation priorities. Nature. 2000, 403: 853-858. 10.1038/35002501.
Article
CAS
PubMed
Google Scholar
Marshall LG, Webb SD, Sepkoski JJ, Raup DM: Mammalian evolution and the Great American Interchange. Science. 1982, 215: 1351-1357. 10.1126/science.215.4538.1351.
Article
CAS
PubMed
Google Scholar
Weir JT, Bermingham E, Schluter D: The Great American Biotic Interchange in birds. Proc Natl Acad Sci USA. 2009, 106: 21737-21742. 10.1073/pnas.0903811106.
Article
CAS
PubMed
PubMed Central
Google Scholar
Smith BT, Klicka J: The profound influence of the Late Pliocene Panamanian uplift on the exchange diversification and distribution of New World birds. Ecography. 2010, 33 (4): 648-655. 10.1111/j.1600-0587.2009.06335.x.
Article
Google Scholar
Weir JT: Implications of genetic differentiation in neotropical montane forest birds. Ann Mo Bot Gard. 2009, 96: 410-433. 10.3417/2008011.
Article
Google Scholar
Edwards CW, Bradley RD: Molecular systematics and historical phylobiogeography of the Neotoma mexicana species group. J Mammal. 2002, 83: 20-30. 10.1644/1545-1542(2002)083<0020:MSAHPO>2.0.CO;2.
Article
Google Scholar
Cadena CD, Klicka J, Ricklefs RE: Evolutionary differentiation in the Neotropical montane region: Molecular phylogenetics and phylogeography of Buarremon brush-finches (Aves, Emberizidae). Mol Phylogenet Evol. 2007, 44: 993-1016. 10.1016/j.ympev.2006.12.012.
Article
CAS
PubMed
Google Scholar
León-Paniagua L, Navarro-Sigüenza AG, Hernández-Baños BE, Morales JC: Diversification of the arboreal mice of the genus Habromys (Rodentia: Cricetidae: Neotominae) in the Mesoamerican highlands. Mol Phylogenet Evol. 2007, 42: 653-664.
Article
PubMed
Google Scholar
Bonaccorso E, Navarro-Sigüenza AG, Sánchez-González LA, Peterson AT, García-Moreno J: Genetic differentiation of the Chlorospingus ophthalmicus complex in Mexico and Central America. J Avian Biol. 2008, 39: 311-321. 10.1111/j.0908-8857.2008.04233.x.
Article
Google Scholar
Cortés-Rodríguez N, Hernández-Baños BE, Navarro-Sigüenza AG, Peterson AT, García-Moreno J: Phylogeography and population genetics of the Amethyst-throated Hummingbird (Lampornis amethystinus):. Mol Phylogenet Evol. 2008, 48: 1-11.
Article
PubMed
Google Scholar
Navarro-Sigüenza AG, Peterson AT, Nyári A, García-Deras GM, García-Moreno J: Phylogeography of the Buarremon brush-finch complex (Aves Emberizidae) in Mesoamerica. Mol Phylogenet Evol. 2008, 47: 21-35.
Article
PubMed
Google Scholar
Barrier E, Velasquillo L, Chávez M, Gaulon R: Neotectonic evolution of the Isthmus of Tehuantepec (southeastern Mexico). Tectonophysics. 1998, 287: 77-96. 10.1016/S0040-1951(98)80062-0.
Article
Google Scholar
Ferrusquía-Villafranca I: Geology of Mexico a synopsis. Biological diversity of Mexico: Origins and Distributions. Edited by: Ramamoorthy TP, Bye RA, Lot A, Fa JE. 1993, New York: Oxford University Press
Google Scholar
Barber BR, Klicka J: Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna. Proc R Soc Lond B, Biol Sci. 2010, 277: 2675-2681. 10.1098/rspb.2010.0343.
Article
CAS
Google Scholar
Howell SNG, Webb S: A guide to the birds of Mexico and northern Central America. 1995, New York: Oxford University Press
Google Scholar
American Ornithologist's Union (AOU): Check-list of North American Birds, Washington DC. 1998, 7
Google Scholar
Höglund J, Alatalo RV: Leks. 1995, New Jersey: Princeton University Press
Book
Google Scholar
González C, Ornelas JF: Song structure and microgeographic song variation in Wedge-tailed Sabrewings (Campylopterus curvipennis) in Veracruz Mexico. Auk. 2005, 122: 593-607.
Article
Google Scholar
González C, Ornelas JF: Song variation and persistence of song neighborhoods in a lekking hummingbird. Condor. 2009, 111: 633-640.
Article
Google Scholar
Moritz C, Patton JL, Schneider CJ, Smith TB: Diversification of rainforest faunas: An integrated molecular approach. Annu Rev Ecol Evol Syst. 2000, 31: 533-563. 10.1146/annurev.ecolsys.31.1.533.
Article
Google Scholar
Edwards SV, Kingan SB, Calkins JD, Balakrishnan CN, Jennings WB, Swanson WJ, Sorenson MD: Speciation in birds: Genes geography and sexual selection. Proc Natl Acad Sci USA. 2005, 102: 6550-6557. 10.1073/pnas.0501846102.
Article
CAS
PubMed
PubMed Central
Google Scholar
Johnsen A, Andersson S, Garcia Fernandez J, Kempenaers B, Pavel V, Questiau S, Raess M, Rindal E, Lifjeld JT: Molecular and phenotypic divergence in the bluethroat (Luscinia svecica) subspecies complex. Mol Ecol. 2006, 15: 4033-4047. 10.1111/j.1365-294X.2006.03075.x.
Article
CAS
PubMed
Google Scholar
Milá B, Wayne RK, Fitze P, Smith TB: Divergence with gene flow and fine-scale pylogeographical structure in the wedge-billed woodcreeper Glyphorynchus spirurus a Neotropical rainforest bird. Mol Ecol. 2009, 18: 2979-2995.
Article
PubMed
Google Scholar
Clegg SM, Degnan SM, Moritz C, Estoup A, Kikkawa J, Owens IPF: Microevolution in island forms: the roles of drift and directional selection in morphological divergence of a passerine bird. Evolution. 2002, 56: 2090-2099.
Article
PubMed
Google Scholar
Nosil P, Egan SP, Funk DJ: Heterogeneous genomic differentiation between walking-stick ecotypes: "isolation by adaptation" and multiple roles for divergent selection. Evolution. 2008, 62: 316-336. 10.1111/j.1558-5646.2007.00299.x.
Article
PubMed
Google Scholar
Irwin DE: Song variation in an avian ring species. Evolution. 2000, 54: 998-1010.
Article
CAS
PubMed
Google Scholar
Slabbekoorn H, Ellers J, Smith TB: Birdsong and sound transmission: the benefits of reverberations. Condor. 2002, 104: 564-573. 10.1650/0010-5422(2002)104[0564:BASTTB]2.0.CO;2.
Article
Google Scholar
Price T: Sexual selection and natural selection in bird speciation. Phil Trans R Soc Lon B. 1998, 353: 251-260. 10.1098/rstb.1998.0207.
Article
PubMed Central
Google Scholar
Irwin DE, Thimgan MP, Irwin JH: Call divergence is correlated with geographic and genetic distance in greenish warblers (Phylloscopus trochiloides): a strong role for stochasticity in signal evolution?. J Evol Biol. 2008, 21: 435-448. 10.1111/j.1420-9101.2007.01499.x.
Article
CAS
PubMed
Google Scholar
Masta SE, Maddison WP: Sexual selection driving diversification in jumping spiders. Proc Natl Acad Sci USA. 2002, 99: 4442-4447. 10.1073/pnas.072493099.
Article
CAS
PubMed
PubMed Central
Google Scholar
Winker K, Ramos MA, Rappole JH, Warner DW: A note on Campylopterus excellens in southern Veracruz, with a guide to sexing captured individuals. J Field Ornithol. 1992, 63: 339-343.
Google Scholar
Del Hoyo J, Elliott A, Sargatal J, eds: Handbook of the birds of the world. 1999, Barn-owls to Hummingbirds. Barcelona: Lynx Editions, 5:
Google Scholar
Funk DJ, Omland KE: Species-level paraphyly and polyphyly: frequency causes and consequences with insights from animal mitochondrial DNA. Annu Rev Ecol Evol Syst. 2003, 34: 397-423. 10.1146/annurev.ecolsys.34.011802.132421.
Article
Google Scholar
Lambeck K, Chappell J: Sea level change through the last glacial cycle. Science. 2001, 292: 679-686. 10.1126/science.1059549.
Article
CAS
PubMed
Google Scholar
Graham A: Studies in Neotropical paleobotany. XII. An Oligo-Miocene palynoflora from Simojovel (Chiapas, Mexico). Am J Bot. 1999, 86: 17-31. 10.2307/2656951.
Article
CAS
PubMed
Google Scholar
Piperno DR, Moreno JE, Iriarte J, Holst I, Lachniet M, Jones JG, Ranere AJ, Castanzo R: Late Pleistocene and Holocene environmental history of the iguala valley central balsas watershed of Mexico. Proc Natl Acad Sci USA. 2007, 104: 11874-11881. 10.1073/pnas.0703442104.
Article
CAS
PubMed
PubMed Central
Google Scholar
Thomassen HA, Cheviron ZA, Freedman AH, Harrigan RJ, Wayne RK, Smith TB: Spatial modelling and landscape-level approaches for visualizing intra-specific variation. Mol Ecol. 2010, 19: 3532-3548. 10.1111/j.1365-294X.2010.04737.x.
Article
PubMed
Google Scholar
Templeton AR: The reality and importance of founder speciation in evolution. Bioessays. 2008, 30: 470-479. 10.1002/bies.20745.
Article
PubMed
Google Scholar
Uyeda JC, Arnold SJ, Hohenlohe PA, Mead LS: Drift promotes speciation by sexual selection. Evolution. 2009, 63: 583-594. 10.1111/j.1558-5646.2008.00589.x.
Article
PubMed
Google Scholar
Losos JB, Ricklefs RE: Adaptation and diversification on islands. Nature. 2009, 457: 830-836. 10.1038/nature07893.
Article
CAS
PubMed
Google Scholar
Chaves JA, Pollinger JP, Smith TB, LeBuhn G: The role of geography and ecology in shaping the phylogeography of the speckled hummingbird (Adelomyia melanogenys) in Ecuador. Mol Phylogenet Evol. 2007, 43: 795-807. 10.1016/j.ympev.2006.11.006.
Article
PubMed
Google Scholar
Slabbekoorn H, Smith TB: Habitat-dependent song divergence in the little greenbul: an analysis of environmental selection pressures on acoustic signals. Evolution. 2002, 56: 1849-1858.
Article
PubMed
Google Scholar
Patten MA, Rotenberry JT, Zuk M: Habitat selection, acoustic adaptation, and the evolution of reproductive isolation. Evolution. 2004, 58: 2144-2155.
Article
PubMed
Google Scholar
Seddon N: Ecological adaptation and species recognition drives vocal evolution in Neotropical suboscine birds. Evolution. 2005, 59: 200-215.
Article
PubMed
Google Scholar
Ruegg K, Slabbekoorn H, Clegg S, Smith TB: Divergence in mating signals correlates with ecological variation in the migratory songbird Swainson's thrush (Catharus ustulatus). Mol Ecol. 2006, 15: 3147-3156. 10.1111/j.1365-294X.2006.03011.x.
Article
CAS
PubMed
Google Scholar
Nichols JA, Austin AJ, Moritz C, Goldizen AW: Genetic population structure and call variation in a passerine bird, the satin bowerbird, Ptilonorhynchus violaceus. Evolution. 2006, 60: 1279-1290.
Article
Google Scholar
Dingle C, Halfwerk W, Slabbekoorn H: Habitat-dependent song divergence at subspecies level in the grey-breasted wood-wren. J Evol Biol. 2008, 21: 1079-1089. 10.1111/j.1420-9101.2008.01536.x.
Article
CAS
PubMed
Google Scholar
Nottebohm F: The song of the chingolo, Zonotrichia capensis in Argentina: description and evaluation of a system of dialects. Condor. 1969, 71: 299-315. 10.2307/1366306.
Article
Google Scholar
Vaneechoutte M: Bird song as a possible cultural mechanism for speciation. Journal of Memetics-Evolutionary Models of Information Transmission, 1. 1997, [http://cfpm.org/jom-emit/1997/vol1/vaneechoutte_m.html]
Google Scholar
Boul KE, Funk WC, Darst CR, Cannatella DC, Ryan MJ: Sexual selection drives speciation in an Amazonian frog. Proc R Soc Lond B, Biol Sci. 2007, 274: 399-406. 10.1098/rspb.2006.3736.
Article
Google Scholar
Dobzhansky T: Genetics and the origin of species. 1937, New York: Columbia University Press
Google Scholar
Jarvis ED, Ribeiro S, Da Silva ML, et al: Behaviourally driven gene expression reveals song nuclei in hummingbird brain. Nature. 2000, 406: 628-632. 10.1038/35020570.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mundinger PC: Animal cultures and a general theory of cultural evolution. Ethol Sociobiol. 1980, 1: 183-223. 10.1016/0162-3095(80)90008-4.
Article
Google Scholar
Koetz AH, Westcott DA, Congdon BC: Geographical variation in song frequency and structure: the effects of vicariant isolation, habitat type and body size. Anim Behav. 2007, 74: 1573-1583. 10.1016/j.anbehav.2007.03.022.
Article
Google Scholar
Podos J, Huber SK, Taft B: Bird song: the interface of evolution and mechanism. Annu Rev Ecol Evol Syst. 2004, 35: 55-87. 10.1146/annurev.ecolsys.35.021103.105719.
Article
Google Scholar
Lachlan RF, Servedio MR: Song learning accelerates allopatric speciation. Evolution. 2004, 58: 2049-2063.
Article
CAS
PubMed
Google Scholar
Dirzo R, García MC: Rates of deforestation in Los Tuxtlas a Neotropical area in Southeast Mexico. Conserv Biol. 1992, 6: 84-90. 10.1046/j.1523-1739.1992.610084.x.
Article
Google Scholar
Lozano-García MS, Caballero M, Ortega B, Rodríguez A, Sosa S: Tracing the effects of the Little Ice Age in the tropical lowlands of eastern Mesoamerica. Proc Natl Acad Sci USA. 2007, 104: 16200-16203.
Article
Google Scholar
Winker K: Introducción a las aves de los Tuxtlas. Historia natural de los Tuxtlas. Edited by: González Soriano E, Dirzo R, Vogt RC. 1997, México DF: Universidad Autónoma de México, 535-543.
Google Scholar
Fridolfsson AK, Ellegren H: A simple and universal method for molecular sexing of non-ratite birds. J Avian Biol. 1999, 30: 116-121. 10.2307/3677252.
Article
Google Scholar
Sehgal RNM, Jones HI, Smith TB: Molecular evidence for host specificity of parasitic nematode microfilariae in some African rainforest birds. Mol Ecol. 2005, 14: 3977-3988. 10.1111/j.1365-294X.2005.02555.x.
Article
PubMed
Google Scholar
Lowery GH, Dalquest WW: Birds from the State of Veracruz Mexico. 1951, Lawrence KA: University of Kansas Publications
Google Scholar
Morin PA, Messeir J, Woodruff DS: DNA extraction amplification and direct sequencing from Hornbill feathers. J Sci Soc Thailand. 1994, 20: 31-41. 10.2306/scienceasia1513-1874.1994.20.031.
Article
CAS
Google Scholar
Eberhard JR, Bermingham E: Phylogeny and biogeography of the Amazona ochrocephala (Aves: Psittacidae) complex. Auk. 2004, 121: 318-332. 10.1642/0004-8038(2004)121[0318:PABOTA]2.0.CO;2.
Article
Google Scholar
Rambaut D: Se-Al: Sequence Alignment Editor v20 Copyright © 1996-2002.
Abdoullaye D, Acevedo I, Adebayo AA, Behrmann-Godel J, Benjamin RC, Bock D, Born C, Brouat C, Caccone A, Cao L, et al: Permanent genetic resources added to molecular ecology resources database 1 August 2009-30 September 2009. Mol Ecol Resour. 2010, 10: 232-236. 10.1111/j.1755-0998.2009.02796.x.
Article
CAS
PubMed
Google Scholar
Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17: 754-755. 10.1093/bioinformatics/17.8.754.
Article
CAS
PubMed
Google Scholar
Posada D, Crandall KA: Modeltest: testing the model of DNA substitution. Bioinformatics. 1998, 14: 817-818. 10.1093/bioinformatics/14.9.817.
Article
CAS
PubMed
Google Scholar
Arbogast BS, Edwards SV, Wakeley J, Beerli P, Slowinsli JB: Estimating divergence times from molecular data on phylogenetic and population genetic timescales. Annu Rev Ecol Syst. 2002, 33: 707-740. 10.1146/annurev.ecolsys.33.010802.150500.
Article
Google Scholar
Lovette IJ: Mitochondrial dating and mixed support for the "2% rule" in birds. Auk. 2004, 121: 1-6. 10.1642/0004-8038(2004)121[0001:MDAMSF]2.0.CO;2.
Google Scholar
García-Moreno J: Is there a universal mtDNA clock for birds?. J Avian Biol. 2004, 35: 465-468.
Article
Google Scholar
Weir JT, Schluter D: Calibrating the avian molecular clock. Mol Ecol. 2008, 17: 2321-2328. 10.1111/j.1365-294X.2008.03742.x.
Article
CAS
PubMed
Google Scholar
Paxinos EE, James HF, Olson SL, Sorenson MD, Jackson J, Fleischer RC: mtDNA from fossils reveals a radiation of Hawaiian geese recently derived from the Canada goose (Branta Canadensis). Proc Natl Acad Sci USA. 99: 1399-1404. 10.1073/pnas.032166399.
Weir JT, Bermingham E, Miller MJ, Klicka J, González MA: Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus). Mol Phylogenet Evol. 2008, 47: 650-664. 10.1016/j.ympev.2008.02.004.
Article
CAS
PubMed
Google Scholar
García-Moreno J, Navarro-Sigüenza AG, Peterson AT, Sánchez-González LA: Genetic variation coincides with geographic structure in the common bush-tanager (Chlorospingus ophthalmicus) complex from Mexico. Mol Phylogenet Evol. 2004, 33: 186-196.
Article
PubMed
Google Scholar
Tarr CL, Fleischer RC: Mitochondrial-DNA variation and evolutionary relationships in the Amakihi complex. Auk. 1993, 110: 825-831.
Article
Google Scholar
Milá B, Smith TB, Wayne RK: Speciation and rapid phenotypic differentiation in the yellow-rumped warbler Dendroica coronata complex. Mol Ecol. 2007, 16: 159-173.
Article
PubMed
Google Scholar
Baker AJ, Marshall HD: Mitochondrial control-region sequences as tools for understanding evolution. Avian Molecular Systematics and Evolution. Edited by: Mindell DP. 1997, New York: Academic Press, 51-82.
Chapter
Google Scholar
Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
Article
PubMed
PubMed Central
Google Scholar
Clement M, Posada D, Crandall KA: TCS: a computer program to estimate genealogies. Mol Ecol. 2000, 9: 1657-1659. 10.1046/j.1365-294x.2000.01020.x.
Article
CAS
PubMed
Google Scholar
Pfenninger M, Posada D: Phylogeographic history of the land snail Candidula unifasciata (Helicellinae Stylommatophora): Fragmentation corridor migration and secondary contact. Evolution. 2002, 56: 1776-1788.
Article
PubMed
Google Scholar
Excoffier L, Laval G, Schneider S: Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online. 2005, 1: 47-50.
CAS
Google Scholar
Raymond M, Rousset F: GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered. 1995, 86: 248-249.
Google Scholar
Rice WR: Analyzing tables of statistical tests. Evolution. 1989, 43: 223-225. 10.2307/2409177.
Article
Google Scholar
Slatkin M: A measure of population subdivision based on microsatellite allele frequencies. Genetics. 1995, 139: 457-462.
CAS
PubMed
PubMed Central
Google Scholar
Weir BS, Cockerham CC: Estimating F-Statistics for the analysis of population structure. Evolution. 1984, 38: 1358-1370. 10.2307/2408641.
Article
Google Scholar
Goodman SJ: RST CALC: A collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance. Mol Ecol. 1997, 6: 881-885. 10.1111/j.1365-294X.1997.tb00143.x.
Article
CAS
Google Scholar
Swofford DL: . 2002, PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods) Sinauer Associates Sunderland Massachusetts
Pritchard JK, Stephens M, Donnelly P: Inference of population structure using multilocus genotype data. Genetics. 2000, 155: 945-959.
CAS
PubMed
PubMed Central
Google Scholar
Evanno G, Regnaut S, Goudet J: Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005, 14: 2611-2620. 10.1111/j.1365-294X.2005.02553.x.
Article
CAS
PubMed
Google Scholar
Beerli P, Felsenstein J: Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci USA. 2001, 98: 4563-4568. 10.1073/pnas.081068098.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hey J, Nielsen R: Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc Natl Acad Sci USA. 2007, 104: 2785-2790. 10.1073/pnas.0611164104.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ortego J, Aparicio JM, Cordero PJ, Calabuig G: Characteristics of loci and individuals are associated with germline microsatellite mutation rates in lesser kestrels (Falco naumanni). Mutat Res. 2008, 648: 82-86. 10.1016/j.mrfmmm.2008.09.012.
Article
CAS
PubMed
Google Scholar
Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A: Very high resolution interpolated climate surfaces for global land areas. Int J Climatology. 2005, 25: 1965-1978. 10.1002/joc.1276.
Article
Google Scholar
USGS 2001 HYDRO1k Elevation Derivative Database. US Geological Survey Washington DC. [http://eros.usgs.gov/#/Find_Data/Products_and_Data_Available/gtopo30/hydro]
Bohonak AJ: IBD (Isolation By Distance): a program for analyses of isolation by distance. J Hered. 2002, 93: 153-154. 10.1093/jhered/93.2.153.
Article
CAS
PubMed
Google Scholar
Colwell RK: EstimateS: Statistical estimation of species richness and shared species from samples. Version 8. Persistent. 2006, [http://purl.oclc.org/estimates]
Google Scholar
Cadena CD, Cheviron ZA, Funk WC: Testing the molecular and evolutionary causes of a 'leapfrog' pattern of geographical variation in coloration. J Evol Biol. 2011, 24: 402-414. 10.1111/j.1420-9101.2010.02175.x.
Article
CAS
PubMed
Google Scholar
Thiele K: The Holy Grail of the perfect character: the cladistic treatment of morphometric data. Cladistics. 1993, 9: 275-304. 10.1111/j.1096-0031.1993.tb00226.x.
Article
Google Scholar
Slatkin M, Maddison WP: A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics. 1989, 123: 603-613.
CAS
PubMed
PubMed Central
Google Scholar
Maddison WP, Maddison DR: MESQUITE: a modular system for evolutionary analysis. ver. 1.0. 2003, [http://mesquiteproject.org]
Google Scholar