Dobzhansky T: Genetics and the origin of species/by Theodosius Dobzhansky. 1964, New York: Columbia University Press
Google Scholar
Smadja C, Butlin RK: On the scent of speciation: the chemosensory system and its role in premating isolation. Heredity. 2008, 102 (1): 77-97. 10.1111/j.1601-5223.1985.tb00468.x.
Article
PubMed
Google Scholar
Karlson P, Luscher M: Pheromones': a new term for a class of biologically active substances. Nature. 1959, 183 (4653): 55-56. 10.1038/183055a0.
Article
CAS
PubMed
Google Scholar
Tegoni M, Pelosi P, Vincent F, Spinelli S, Campanacci V, Grolli S, Ramoni R, Cambillau C: Mammalian odorant binding proteins. Biochimica et Biophysica Acta (BBA). Protein Structure and Molecular Enzymology. 2000, 1482 (1-2): 229-240. 10.1016/S0167-4838(00)00167-9.
Article
CAS
Google Scholar
Pelosi P: The role of perireceptor events in vertebrate olfaction. Cell Mol Life Sci. 2001, 58 (4): 503-509. 10.1007/PL00000875.
Article
CAS
PubMed
Google Scholar
Signoret JP: Reproductive behaviour of pigs. J Reprod Fertil Suppl. 1970, 11 (11): Suppl 11:105+.
Google Scholar
Beynon RJ, Hurst JL: Multiple roles of major urinary proteins in the house mouse, Mus domesticus. Biochem Soc Trans. 2003, 31 (Pt 1): 142-146.
Article
CAS
PubMed
Google Scholar
Marchese S, Pes D, Scaloni A, Carbone V, Pelosi P: Lipocalins of boar salivary glands binding odours and pheromones. Eur J Biochem. 1998, 252 (3): 563-568. 10.1046/j.1432-1327.1998.2520563.x.
Article
CAS
PubMed
Google Scholar
Perry GC, Patterson RLS, Macfie HJH, Stinson CG: PIG COURTSHIP BEHAVIOR - PHEROMONAL PROPERTY OF ANDROSTENE STEROIDS IN MALE SUB-MAXILLARY SECRETION. Animal Production. 1980, 31 (OCT): 191-199.
Article
CAS
Google Scholar
Guiraudie G, Pageat P, Cain AH, Madec I, Meillour PN-L: Functional Characterization of Olfactory Binding Proteins for Appeasing Compounds and Molecular Cloning in the Vomeronasal Organ of Pre-pubertal Pigs. Chem Senses. 2003, 28 (7): 609-619. 10.1093/chemse/bjg052.
Article
CAS
PubMed
Google Scholar
Scaloni A, Paolini S, Brandazza A, Fantacci M, Bottiglieri C, Marchese S, Navarrini A, Fini C, Ferrara L, Pelosi P: Purification, cloning and characterisation of odorant- and pheromone-binding proteins from pig nasal epithelium. Cell Mol Life Sci. 2001, 58 (5-6): 823-834.
Article
CAS
PubMed
Google Scholar
Flower DR: The lipocalin protein family: structure and function. Biochem J. 1996, 318 (Pt 1): 1-14.
Article
CAS
PubMed
PubMed Central
Google Scholar
Spinelli S, Vincent F, Pelosi P, Tegoni M, Cambillau C: Boar salivary lipocalin. Three-dimensional X-ray structure and androsterol/androstenone docking simulations. Eur J Biochem. 2002, 269 (10): 2449-2456. 10.1046/j.1432-1033.2002.02901.x.
Article
CAS
PubMed
Google Scholar
Loebel D, Scaloni A, Paolini S, Fini C, Ferrara L, Breer H, Pelosi P: Cloning, post-translational modifications, heterologous expression and ligand-binding of boar salivary lipocalin. Biochem J. 2000, 350 (Pt 2): 369-379.
Article
CAS
PubMed
PubMed Central
Google Scholar
Touhara K, Vosshall LB: Sensing Odorants and Pheromones with Chemosensory Receptors. Annual Review of Physiology. 2009, 71 (1): 307-332. 10.1146/annurev.physiol.010908.163209.
Article
CAS
PubMed
Google Scholar
Ganfornina MD, Gutierrez G, Bastiani MSD: A Phylogenetic Analysis of the Lipocalin Protein Family. Mol Biol Evol. 2000, 17 (1): 114-126.
Article
CAS
PubMed
Google Scholar
Logan DW, Marton TF, Stowers L: Species Specificity in Major Urinary Proteins by Parallel Evolution. PLoS ONE. 2008, 3 (9): e3280-10.1371/journal.pone.0003280.
Article
PubMed
PubMed Central
Google Scholar
Zhang ZD, Frankish A, Hunt T, Harrow J, Gerstein M: Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Genome Biol. 2010, 11 (3): R26-10.1186/gb-2010-11-3-r26.
Article
PubMed
PubMed Central
Google Scholar
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, et al: A draft sequence of the Neandertal genome. Science. 2010, 328 (5979): 710-722. 10.1126/science.1188021.
Article
CAS
PubMed
Google Scholar
Flicek P, Aken BL, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Coates G, Fairley S, et al: Ensembl's 10th year. Nucleic Acids Res. 2009, 38 (Database issue): D557-562.
PubMed
PubMed Central
Google Scholar
Sawyer S: Statistical tests for detecting gene conversion. Mol Biol Evol. 1989, 6 (5): 526-538.
CAS
PubMed
Google Scholar
Yang Z, Bielawski JP: Statistical methods for detecting molecular adaptation. Trends Ecol Evol. 2000, 15 (12): 496-503. 10.1016/S0169-5347(00)01994-7.
Article
PubMed
Google Scholar
Yang Z, Swanson WJ: Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes. Mol Biol Evol. 2002, 19 (1): 49-57.
Article
PubMed
Google Scholar
Yang Z: PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 2007, 24 (8): 1586-1591. 10.1093/molbev/msm088.
Article
CAS
PubMed
Google Scholar
Doron-Faigenboim A, Stern A, Mayrose I, Bacharach E, Pupko T: Selecton: a server for detecting evolutionary forces at a single amino-acid site. Bioinformatics. 2005, 21 (9): 2101-2103. 10.1093/bioinformatics/bti259.
Article
CAS
PubMed
Google Scholar
Rost B, Sander C: Conservation and prediction of solvent accessibility in protein families. Proteins. 1994, 20 (3): 216-226. 10.1002/prot.340200303.
Article
CAS
PubMed
Google Scholar
Yang Z, Nielsen R: Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol. 2002, 19 (6): 908-917.
Article
CAS
PubMed
Google Scholar
Weaver TD, Roseman CC, Stringer CB: Close correspondence between quantitative- and molecular-genetic divergence times for Neandertals and modern humans. Proc Natl Acad Sci USA. 2008, 105 (12): 4645-4649. 10.1073/pnas.0709079105.
Article
CAS
PubMed
PubMed Central
Google Scholar
Innan H, Kondrashov F: The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet. 2010, 11 (2): 97-108.
CAS
PubMed
Google Scholar
Karn RC, Laukaitis CM: The mechanism of expansion and the volatility it created in three pheromone gene clusters in the mouse (Mus musculus) genome. Genome Biol Evol. 2009, 1: 494-503.
Article
PubMed
PubMed Central
Google Scholar
Mudge JM, Armstrong SD, McLaren K, Beynon RJ, Hurst JL, Nicholson C, Robertson DH, Wilming LG, Harrow JL: Dynamic instability of the major urinary protein gene family revealed by genomic and phenotypic comparisons between C57 and 129 strain mice. Genome Biol. 2008, 9 (5): R91-10.1186/gb-2008-9-5-r91.
Article
PubMed
PubMed Central
Google Scholar
Aguileta G, Bielawski JP, Yang Z: Gene conversion and functional divergence in the beta-globin gene family. J Mol Evol. 2004, 59 (2): 177-189. 10.1007/s00239-004-2612-0.
Article
CAS
PubMed
Google Scholar
Kondrashov FA, Rogozin IB, Wolf YI, Koonin EV: Selection in the evolution of gene duplications. Genome Biol. 2002, 3 (2): RESEARCH0008-
Article
PubMed
PubMed Central
Google Scholar
Emes RD, Beatson SA, Ponting CP, Goodstadt L: Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents. Genome Res. 2004, 14 (4): 591-602. 10.1101/gr.1940604.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gilad Y, Man O, Glusman G: A comparison of the human and chimpanzee olfactory receptor gene repertoires. Genome Res. 2005, 15 (2): 224-230. 10.1101/gr.2846405.
Article
CAS
PubMed
PubMed Central
Google Scholar
Moreno-Estrada A, Casals F, Ramirez-Soriano A, Oliva B, Calafell F, Bertranpetit J, Bosch E: Signatures of selection in the human olfactory receptor OR5I1 gene. Mol Biol Evol. 2008, 25 (1): 144-154.
Article
CAS
PubMed
Google Scholar
Nielsen R, Bustamante C, Clark AG, Glanowski S, Sackton TB, Hubisz MJ, Fledel-Alon A, Tanenbaum DM, Civello D, White TJ, et al: A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol. 2005, 3 (6): e170-10.1371/journal.pbio.0030170.
Article
PubMed
PubMed Central
Google Scholar
Zhuang H, Chien MS, Matsunami H: Dynamic functional evolution of an odorant receptor for sex-steroid-derived odors in primates. Proceedings of the National Academy of Sciences. 2009, 106 (50): 21247-21251. 10.1073/pnas.0808378106.
Article
CAS
Google Scholar
Shi P, Bielawski JP, Yang H, Zhang YP: Adaptive diversification of vomeronasal receptor 1 genes in rodents. J Mol Evol. 2005, 60 (5): 566-576. 10.1007/s00239-004-0172-y.
Article
CAS
PubMed
Google Scholar
Roelofs WL, Rooney AP: Molecular genetics and evolution of pheromone biosynthesis in Lepidoptera. Proc Natl Acad Sci USA. 2003, 100 (16): 9179-9184.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cavaggioni A, Mucignat-Caretta C: Major urinary proteins, alpha(2U)-globulins and aphrodisin. Biochim Biophys Acta. 2000, 1482 (1-2): 218-228. 10.1016/S0167-4838(00)00149-7.
Article
CAS
PubMed
Google Scholar
Clark NL, Aagaard JE, Swanson WJ: Evolution of reproductive proteins from animals and plants. Reproduction. 2006, 131 (1): 11-22. 10.1530/rep.1.00357.
Article
CAS
PubMed
Google Scholar
Horth L: Sensory genes and mate choice: evidence that duplications, mutations, and adaptive evolution alter variation in mating cue genes and their receptors. Genomics. 2007, 90 (2): 159-175. 10.1016/j.ygeno.2007.03.021.
Article
CAS
PubMed
Google Scholar
Dorus S, Evans PD, Wyckoff GJ, Choi SS, Lahn BT: Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity. Nat Genet. 2004, 36 (12): 1326-1329. 10.1038/ng1471.
Article
CAS
PubMed
Google Scholar
Schwalie PC, Schultz J: Positive selection in tick saliva proteins of the Salp15 family. J Mol Evol. 2009, 68 (2): 186-191. 10.1007/s00239-008-9194-1.
Article
CAS
PubMed
Google Scholar
Carson AR, Scherer SW: Identifying concerted evolution and gene conversion in mammalian gene pairs lasting over 100 million years. BMC Evol Biol. 2009, 9 (156): 156-
Article
PubMed
PubMed Central
Google Scholar
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22 (22): 4673-4680. 10.1093/nar/22.22.4673.
Article
CAS
PubMed
PubMed Central
Google Scholar
Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, 52 (5): 696-704. 10.1080/10635150390235520.
Article
PubMed
Google Scholar
Felsenstein J: Confidence Limits on Phylogenies: An Approach Using the Bootstrap. Evolution. 1985, 39 (4): 783-791. 10.2307/2408678.
Article
Google Scholar
Posada D: Evaluation of methods for detecting recombination from DNA sequences: empirical data. Molecular biology and evolution. 2002, 19 (5): 708-717.
Article
CAS
PubMed
Google Scholar
Suyama M, Torrents D, Bork P: PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 2006, 34 (Web Server issue): W609-612.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nielsen R, Yang Z: Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics. 1998, 148 (3): 929-936.
CAS
PubMed
PubMed Central
Google Scholar
Yang Z: Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A. J Mol Evol. 2000, 51 (5): 423-432.
CAS
PubMed
Google Scholar
Swanson WJ, Nielsen R, Yang Q: Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol. 2003, 20 (1): 18-20.
Article
CAS
PubMed
Google Scholar
Doron-Faigenboim A, Pupko T: A combined empirical and mechanistic codon model. Mol Biol Evol. 2007, 24 (2): 388-397.
Article
CAS
PubMed
Google Scholar
Yang Z, Wong WS, Nielsen R: Bayes empirical bayes inference of amino acid sites under positive selection. Molecular biology and evolution. 2005, 22 (4): 1107-1118. 10.1093/molbev/msi097.
Article
CAS
PubMed
Google Scholar
Zhang J, Nielsen R, Yang Z: Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 2005, 22 (12): 2472-2479. 10.1093/molbev/msi237.
Article
CAS
PubMed
Google Scholar
Ahmad S, Gromiha M, Fawareh H, Sarai A: ASAView: database and tool for solvent accessibility representation in proteins. BMC Bioinformatics. 2004, 5 (51): 51-
Article
PubMed
PubMed Central
Google Scholar
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE: UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004, 25 (13): 1605-1612. 10.1002/jcc.20084.
Article
CAS
PubMed
Google Scholar