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Table 1 General information on alignment of the markers and substitution models used for creating Maximum Likelihood trees. #sequences gives the number of sequences available per marker in this study, whereas the ones in brackets are from Østbye et al. [15]. Positions is the number of nucleotides per alignment, V stands for the number of variable sites in each alignment, Pi is the number of phylogenetically informative sites per alignment, %Pi explains the percentage of the sequence that is phylogenetically informative. Model is the substitution model test (log likelihood-ratio test) carried out in MEGA7 to find the best model for constructing a Maximum Likelihood (ML) tree and base composition explains the nucleotide composition of the alignment

From: Phylogenetic analysis of museum specimens of houting Coregonus oxyrinchus shows the need for a revision of its extinct status

 

Genetic marker

#sequences

Positions

V

Pi

%Pi

Model

Base composition

T

C

A

G

Mitochondrial

Cytochrome b (CytB) & NADH dehydrogenase 3 (ND3)

22 + (62)

460

51

27

5.9

K2 + G

0.301

0.342

0.199

0.158