Divergent and non-parallel evolution of MHC IIB in the Neotropical Midas cichlid species complex

Bracamonte, Seraina E.; Hofmann, Melinda J.; Lozano-Martín, Carlos; Eizaguirre, Christophe; Barluenga, Marta

doi:10.1186/s12862-022-01997-9

BMC Ecology and Evolution

Table 3 Diversity indices for populations, lakes, and averaged across all samples of the Midas cichlid populations

From: Divergent and non-parallel evolution of MHC IIB in the Neotropical Midas cichlid species complex

	n	No. alleles	No. priv. alleles	No. supertypes	Mean no. alleles	Mean no. supertypes	π	aa p-dist	dN	dS
L Nicaragua	49	66	14	13	7.9 ± 0.26	5.9 ± 0.17	0.254 ± 0.002	0.397 ± 0.003	0.299 ± 0.003	0.396 ± 0.008
A. citrinellus	24	50	8	13	8.9 ± 0.30	6.4 ± 0.16	0.253 ± 0.002	0.395 ± 0.003	0.295 ± 0.003	0.400 ± 0.011
A. labiatus	25	38	4	11	7.0 ± 0.33	5.5 ± 0.28	0.255 ± 0.003	0.400 ± 0.005	0.303 ± 0.005	0.392 ± 0.013
L Managua	24	66	22	13	8.0 ± 0.22	6.4 ± 0.20	0.246 ± 0.002	0.382 ± 0.004	0.288 ± 0.003	0.399 ± 0.009
A. citrinellus	20	55	19	13	8.0 ± 0.19	6.4 ± 0.21	0.246 ± 0.002	0.382 ± 0.004	0.288 ± 0.004	0.399 ± 0.011
A. labiatus	4	23	3	10	8.0 ± 1.08	6.2 ± 0.63	0.246 ± 0.005	0.384 ± 0.009	0.287 ± 0.008	0.401 ± 0.007
CL Masaya	45	46	3	12	7.6 ± 0.21	5.9 ± 0.18	0.254 ± 0.002	0.392 ± 0.003	0.298 ± 0.003	0.421 ± 0.007
A. cf. citrinellus	27	40	0	12	7.4 ± 0.30	5.7 ± 0.24	0.252 ± 0.003	0.391 ± 0.004	0.297 ± 0.004	0.413 ± 0.010
A. cf. labiatus	18	43	1	12	7.9 ± 0.25	6.1 ± 0.25	0.256 ± 0.002	0.394 ± 0.003	0.300 ± 0.003	0.433 ± 0.008
CL Asososca León	43	27	7	10	6.5 ± 0.18	4.8 ± 0.15	0.248 ± 0.002	0.377 ± 0.003	0.286 ± 0.003	0.418 ± 0.010
A. citrinellus f. benthic	23	23	2	9	6.7 ± 0.21	5.0 ± 0.23	0.246 ± 0.003	0.374 ± 0.004	0.284 ± 0.004	0.419 ± 0.012
A. citrinellus f. limnetic	20	24	2	10	6.3 ± 0.30	4.6 ± 0.17	0.250 ± 0.004	0.381 ± 0.004	0.290 ± 0.004	0.418 ± 0.016
CL Apoyo	62	47	16	11	6.8 ± 0.19	5.4 ± 0.12	0.259 ± 0.001	0.400 ± 0.002	0.310 ± 0.002	0.414 ± 0.007
A. astorquii	20	36	9	10	7.1 ± 0.24	5.2 ± 0.15	0.259 ± 0.003	0.399 ± 0.004	0.310 ± 0.003	0.412 ± 0.015
A. chancho	21	28	1	10	7.1 ± 0.35	5.8 ± 0.26	0.255 ± 0.002	0.396 ± 0.003	0.303 ± 0.003	0.412 ± 0.010
A. zaliosus	21	22	2	10	6.2 ± 0.35	5.2 ± 0.18	0.263 ± 0.002	0.404 ± 0.003	0.317 ± 0.003	0.420 ± 0.009
CL Xiloá	64	68	17	13	8.3 ± 0.19	6.0 ± 0.13	0.256 ± 0.002	0.396 ± 0.002	0.304 ± 0.002	0.413 ± 0.005
A. amarillo	22	46	7	13	8.3 ± 0.26	6.1 ± 0.20	0.251 ± 0.002	0.389 ± 0.003	0.295 ± 0.003	0.406 ± 0.010
A. xiloaensis	11	32	4	11	8.3 ± 0.49	6.0 ± 0.36	0.250 ± 0.005	0.386 ± 0.007	0.292 ± 0.007	0.422 ± 0.014
A. sagittae	31	31	3	12	8.3 ± 0.30	6.0 ± 0.21	0.262 ± 0.002	0.404 ± 0.003	0.314 ± 0.003	0.416 ± 0.007
Total	287	150		13	7.5 ± 0.10	5.7 ± 0.07	0.254 ± 0.001	0.392 ± 0.001	0.299 ± 0.001	0.411 ± 0.003

n, number of individuals; no. alleles, total number of different alleles; no. priv. alleles, number of private alleles; no. supertypes, total number of different supertypes; mean no. alleles, mean ± SE number of alleles per individual; mean no. supertypes, mean ± SE number of supertypes per individual; π, mean ± SE nucleotide p-distance; aa p-dist, mean ± SE amino acid p-distance; dN, mean ± SE dN; dS, mean ± SE dS

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