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Table 3 Diversity indices for populations, lakes, and averaged across all samples of the Midas cichlid populations

From: Divergent and non-parallel evolution of MHC IIB in the Neotropical Midas cichlid species complex

  n No. alleles No. priv. alleles No. supertypes Mean no. alleles Mean no. supertypes π aa p-dist dN dS
L Nicaragua 49 66 14 13 7.9 ± 0.26 5.9 ± 0.17 0.254 ± 0.002 0.397 ± 0.003 0.299 ± 0.003 0.396 ± 0.008
 A. citrinellus 24 50 8 13 8.9 ± 0.30 6.4 ± 0.16 0.253 ± 0.002 0.395 ± 0.003 0.295 ± 0.003 0.400 ± 0.011
 A. labiatus 25 38 4 11 7.0 ± 0.33 5.5 ± 0.28 0.255 ± 0.003 0.400 ± 0.005 0.303 ± 0.005 0.392 ± 0.013
L Managua 24 66 22 13 8.0 ± 0.22 6.4 ± 0.20 0.246 ± 0.002 0.382 ± 0.004 0.288 ± 0.003 0.399 ± 0.009
 A. citrinellus 20 55 19 13 8.0 ± 0.19 6.4 ± 0.21 0.246 ± 0.002 0.382 ± 0.004 0.288 ± 0.004 0.399 ± 0.011
 A. labiatus 4 23 3 10 8.0 ± 1.08 6.2 ± 0.63 0.246 ± 0.005 0.384 ± 0.009 0.287 ± 0.008 0.401 ± 0.007
CL Masaya 45 46 3 12 7.6 ± 0.21 5.9 ± 0.18 0.254 ± 0.002 0.392 ± 0.003 0.298 ± 0.003 0.421 ± 0.007
 A. cf. citrinellus 27 40 0 12 7.4 ± 0.30 5.7 ± 0.24 0.252 ± 0.003 0.391 ± 0.004 0.297 ± 0.004 0.413 ± 0.010
 A. cf. labiatus 18 43 1 12 7.9 ± 0.25 6.1 ± 0.25 0.256 ± 0.002 0.394 ± 0.003 0.300 ± 0.003 0.433 ± 0.008
CL Asososca León 43 27 7 10 6.5 ± 0.18 4.8 ± 0.15 0.248 ± 0.002 0.377 ± 0.003 0.286 ± 0.003 0.418 ± 0.010
 A. citrinellus f. benthic 23 23 2 9 6.7 ± 0.21 5.0 ± 0.23 0.246 ± 0.003 0.374 ± 0.004 0.284 ± 0.004 0.419 ± 0.012
 A. citrinellus f. limnetic 20 24 2 10 6.3 ± 0.30 4.6 ± 0.17 0.250 ± 0.004 0.381 ± 0.004 0.290 ± 0.004 0.418 ± 0.016
CL Apoyo 62 47 16 11 6.8 ± 0.19 5.4 ± 0.12 0.259 ± 0.001 0.400 ± 0.002 0.310 ± 0.002 0.414 ± 0.007
 A. astorquii 20 36 9 10 7.1 ± 0.24 5.2 ± 0.15 0.259 ± 0.003 0.399 ± 0.004 0.310 ± 0.003 0.412 ± 0.015
 A. chancho 21 28 1 10 7.1 ± 0.35 5.8 ± 0.26 0.255 ± 0.002 0.396 ± 0.003 0.303 ± 0.003 0.412 ± 0.010
 A. zaliosus 21 22 2 10 6.2 ± 0.35 5.2 ± 0.18 0.263 ± 0.002 0.404 ± 0.003 0.317 ± 0.003 0.420 ± 0.009
CL Xiloá 64 68 17 13 8.3 ± 0.19 6.0 ± 0.13 0.256 ± 0.002 0.396 ± 0.002 0.304 ± 0.002 0.413 ± 0.005
 A. amarillo 22 46 7 13 8.3 ± 0.26 6.1 ± 0.20 0.251 ± 0.002 0.389 ± 0.003 0.295 ± 0.003 0.406 ± 0.010
 A. xiloaensis 11 32 4 11 8.3 ± 0.49 6.0 ± 0.36 0.250 ± 0.005 0.386 ± 0.007 0.292 ± 0.007 0.422 ± 0.014
 A. sagittae 31 31 3 12 8.3 ± 0.30 6.0 ± 0.21 0.262 ± 0.002 0.404 ± 0.003 0.314 ± 0.003 0.416 ± 0.007
Total 287 150   13 7.5 ± 0.10 5.7 ± 0.07 0.254 ± 0.001 0.392 ± 0.001 0.299 ± 0.001 0.411 ± 0.003
  1. n, number of individuals; no. alleles, total number of different alleles; no. priv. alleles, number of private alleles; no. supertypes, total number of different supertypes; mean no. alleles, mean ± SE number of alleles per individual; mean no. supertypes, mean ± SE number of supertypes per individual; π, mean ± SE nucleotide p-distance; aa p-dist, mean ± SE amino acid p-distance; dN, mean ± SE dN; dS, mean ± SE dS