Opsin | Clade | lnL | LRT | P | Positively selected sites | |
---|---|---|---|---|---|---|
Null | modelA | |||||
RH2 | a | − 10,169.10 | − 10,169.10 | 0 | 1 | – |
b | − 10,166.54 | − 10,164.23 | 4.62 | 0.0315 | 19 (0.881) 31 (0.628) 95 (0.945) 109 (0.882) 122 (0.511) 169 (0.501) 207 (0.966) 266 (0.604) 273 (0.949) 320 (0.578) | |
c | − 10,169.10 | − 10,169.10 | 0 | 1 | – | |
d | − 10,167.62 | − 10,165.03 | 5.16 | 0.0230 | 105 (0.612) 217 (0.993) | |
e | − 10,168.60 | − 10,168.58 | 0.03 | 0.8636 | – | |
f | − 10,166.92 | − 10,162.26 | 9.32 | 0.0022 | 49 (0.944) 95 (0.733) 270 (0.982) 307 (0.907) | |
g | − 10,148.85 | − 10,136.84 | 24.01 | < 0.001 | 14 (0.875) 33 (0.514) 50 (0.946) 65 (0.770) 84 (0.948) 151 (0.523) 195 (0.951) 197 (0.845) 198 (0.600) 217 (0.945) 239 (0.528) 254 (0.952) 286 (0.502) 290 (0.594) 297 (0.581) 321 (0.757) 322 (0.966) 323 (0.990) 325 (0.979) 328 (0.649) 329(0.770) 330 (0.772) | |
RH1 | a | − 3629.453904 | − 3625.696675 | 7.51 | 0.0061 | 35 (0.769) 126 (0.674) 196 (0.858) 210 (0.879) 235 (0.911) 236 (0.959) 281 (0.773) |
b | − 3632.72 | − 3632.72 | 0 | 1 | – | |
c | − 3632.72 | − 3632.72 | 0 | 1 | – | |
d | − 3630.82 | − 3630.82 | 4E-06 | 1 | – | |
SWS2 | a | − 7840.16 | − 7831.84 | 16.63 | < 0.001 | 2 (0.572) 5 (0.605) 10 (0.815) 14 (0.801) 15 (0.575) 21 (0.841) 22 (0.579) 25 (0.507) 27 (0.805) 42 (0.552) 44 (0.889) 45 (0.598) 51 (0.605) 55 (0.623) 87 (0.570) 88 (0.617) 91 (0.567) 95 (0.613) 99 (0.510) 123 (0.556) 125 (0.539) 156 (0.601)162 (0.619) 166 (0.598) 244 (0.600) 257 (0.600) 269 (0.670) 279 (0.604) 283 (0.853) 301 (0.685) 315 (0.708) 328 (0.858)329 (0.818) 332 (0.577) 335 (0.596) 339 (0.533) 341 (0.545) 346 (0.659) 349 (0.687) |
b | − 7851.02 | − 7848.07 | 5.88 | 0.0152 | 38 (0.560) 99 (0.904) 276 (0.687) 299 (0.983) | |
c | − 7852.17 | − 7850.19 | 3.97 | 0.0463 | 18 (0.894) | |
d | − 7852.21 | − 7852.21 | 0 | 1 | – | |
e | − 7852.13 | − 7852.10 | 0.06 | 0.8135 | – | |
f | − 7852.21 | − 7851.96 | 0.50 | 0.4798 | – | |
SWS1 | a | − 4194.06 | − 4194.06 | 0 | 1 | – |
b | − 4194.59 | − 4193.82 | 1.54 | 0.2146 | – | |
c | − 4189.36 | − 4185.92 | 6.87 | 0.0087 | 8 (0.895) 9 (0.860) 10 (0.788) 11 (0.765) 16 (0.704) 27 (0.895) 56 (0.678) 70 (0.888) 125 (0.746) 145 (0.751) 185 (0.881) 194 (0.766) 263 (0.792) 342 (0.512) | |
LWS | a | − 4828.06 | − 4828.06 | 0 | 1 | – |
b | − 4828.06 | − 4828.06 | 0 | 1 | – | |
c | − 4828.06 | − 4828.06 | 0 | 1 | – | |
d | − 4828.06 | − 4828.06 | 0 | 1 | – |