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Table 1 Chloroplast genomic features of seventeen Camellia species

From: Exploring the evolutionary characteristics between cultivated tea and its wild relatives using complete chloroplast genomes

Species CSS CSSA CSSL CSA CSAY CSP CGR CTA CIM CPU CAZ CPI CRE CCR CCU CPE CYU
Genome(bp) 157,117 157,025 157,085 157,028 157,100 157,086 157,127 156,974 156,892 157,076 157,039 156,585 156,971 156,997 156,618 157,121 156,592
CDS (bp) 80,542 80,620 80,650 79,093 79,092 80,622 80,656 79,577 79,655 80,665 80,629 79,619 76,224 79,649 79,643 80,650 79,655
Introns (bp) 15,192 15,196 15,198 17,902 17,902 15,210 15,205 16,947 16,897 15,198 15,195 16,937 15,182 16,239 16,917 15,196 16,935
IGS (bp) 49,535 49,361 49,389 48,200 48,268 49,405 49,418 48,591 48,481 49,365 49,367 48,171 53,717 49,321 48,199 49,427 48,143
tRNA (bp) 2802 2802 2802 2789 2790 2802 2802 2813 2813 2802 2802 2812 2802 2742 2813 2802 2813
rRNA (bp) 9046 9046 9046 9044 9048 9047 9046 9046 9046 9046 9046 9046 9046 9046 9046 9046 9046
Genes 115 115 115 113 113 115 115 115 115 115 115 115 115 114 115 115 115
CDS genes 81 81 81 79 79 81 81 81 81 81 81 81 81 81 81 81 81
tRNA genes 30 30 30 30 30 30 30 30 30 30 30 30 30 29 30 30 30
Introns 18 18 18 22 22 18 18 21 21 18 18 21 18 20 21 18 21
Genome GC 37.3 37.3 37.29 37.3 37.29 37.32 37.29 37.32 37.33 37.3 37.3 37.34 37.31 37.3 37.31 37.29 37.33
CDS GC 37.58 37.57 37.56 37.47 37.47 37.58 37.56 37.57 37.54 37.57 37.56 37.56 37.54 37.54 37.56 37.56 37.54
Introns GC 36.41 36.38 36.38 37.91 37.91 36.42 36.39 37.25 37.28 36.42 36.41 37.22 36.4 37.54 37.25 36.41 37.25
IGS GC 32.93 32.94 32.94 32.48 32.46 32.97 32.94 32.68 32.72 32.93 32.95 32.71 33.39 32.64 32.63 32.92 32.68
tRNA GC 52.86 52.86 52.86 52.99 52.97 52.86 52.86 52.86 52.9 52.89 52.86 52.92 52.86 52.88 52.9 52.86 52.9
rRNA GC 55.39 55.41 55.41 55.40 55.39 55.41 55.41 55.38 55.41 55.42 55.39 55.36 55.34 55.41 55.38 55.39 55.41
Gene losses     orf42,
ycf1,
ycf15
orf42,
ycf1,
ycf15
   orf42,
ycf1
orf42,
ycf1
   orf42,
ycf1
  orf42,
ycf1,
trnG
orf42,
ycf1
  orf42,
ycf1
Intron losses rps12 rps12 rps12    rps12 rps12    rps12 rps12   rps12    rps12  
  1. CSS: Camellia sinensis var. sinensis, CSSA: Camellia sinensis var. sinensis cv. Anhua, CSSL: Camellia sinensis var. sinensis cv. Longjing43, CSA: Camellia sinensis var. assamica, CSAY: Camellia sinensis var. assamica cv. Yunkang10, CSP: Camellia sinensis var. pubilimba, CSP; Camellia grandibracteata, CTA: Camellia taliensis, CIM: Camellia impressinervis, CPU: Camellia pubicosta, CAZ: Camellia azalea, CPI: Camellia pitardii, CRE: Camellia reticulata, CCR: Camellia crapnelliana, CCU: Camellia cuspidate, CPE: Camellia petelotii, CYU: Camellia yunnanensis