Exploring the evolutionary characteristics between cultivated tea and its wild relatives using complete chloroplast genomes

Peng, Jiao; Zhao, Yunlin; Dong, Meng; Liu, Shiquan; Hu, Zhiyuan; Zhong, Xiaofen; Xu, Zhenggang

doi:10.1186/s12862-021-01800-1

Table 1 Chloroplast genomic features of seventeen Camellia species

From: Exploring the evolutionary characteristics between cultivated tea and its wild relatives using complete chloroplast genomes

Species	CSS	CSSA	CSSL	CSA	CSAY	CSP	CGR	CTA	CIM	CPU	CAZ	CPI	CRE	CCR	CCU	CPE	CYU
Genome(bp)	157,117	157,025	157,085	157,028	157,100	157,086	157,127	156,974	156,892	157,076	157,039	156,585	156,971	156,997	156,618	157,121	156,592
CDS (bp)	80,542	80,620	80,650	79,093	79,092	80,622	80,656	79,577	79,655	80,665	80,629	79,619	76,224	79,649	79,643	80,650	79,655
Introns (bp)	15,192	15,196	15,198	17,902	17,902	15,210	15,205	16,947	16,897	15,198	15,195	16,937	15,182	16,239	16,917	15,196	16,935
IGS (bp)	49,535	49,361	49,389	48,200	48,268	49,405	49,418	48,591	48,481	49,365	49,367	48,171	53,717	49,321	48,199	49,427	48,143
tRNA (bp)	2802	2802	2802	2789	2790	2802	2802	2813	2813	2802	2802	2812	2802	2742	2813	2802	2813
rRNA (bp)	9046	9046	9046	9044	9048	9047	9046	9046	9046	9046	9046	9046	9046	9046	9046	9046	9046
Genes	115	115	115	113	113	115	115	115	115	115	115	115	115	114	115	115	115
CDS genes	81	81	81	79	79	81	81	81	81	81	81	81	81	81	81	81	81
tRNA genes	30	30	30	30	30	30	30	30	30	30	30	30	30	29	30	30	30
Introns	18	18	18	22	22	18	18	21	21	18	18	21	18	20	21	18	21
Genome GC	37.3	37.3	37.29	37.3	37.29	37.32	37.29	37.32	37.33	37.3	37.3	37.34	37.31	37.3	37.31	37.29	37.33
CDS GC	37.58	37.57	37.56	37.47	37.47	37.58	37.56	37.57	37.54	37.57	37.56	37.56	37.54	37.54	37.56	37.56	37.54
Introns GC	36.41	36.38	36.38	37.91	37.91	36.42	36.39	37.25	37.28	36.42	36.41	37.22	36.4	37.54	37.25	36.41	37.25
IGS GC	32.93	32.94	32.94	32.48	32.46	32.97	32.94	32.68	32.72	32.93	32.95	32.71	33.39	32.64	32.63	32.92	32.68
tRNA GC	52.86	52.86	52.86	52.99	52.97	52.86	52.86	52.86	52.9	52.89	52.86	52.92	52.86	52.88	52.9	52.86	52.9
rRNA GC	55.39	55.41	55.41	55.40	55.39	55.41	55.41	55.38	55.41	55.42	55.39	55.36	55.34	55.41	55.38	55.39	55.41
Gene losses				orf42, ycf1, ycf15	orf42, ycf1, ycf15			orf42, ycf1	orf42, ycf1			orf42, ycf1		orf42, ycf1, trnG	orf42, ycf1		orf42, ycf1
Intron losses	rps12	rps12	rps12			rps12	rps12			rps12	rps12		rps12			rps12

CSS: Camellia sinensis var. sinensis, CSSA: Camellia sinensis var. sinensis cv. Anhua, CSSL: Camellia sinensis var. sinensis cv. Longjing43, CSA: Camellia sinensis var. assamica, CSAY: Camellia sinensis var. assamica cv. Yunkang10, CSP: Camellia sinensis var. pubilimba, CSP; Camellia grandibracteata, CTA: Camellia taliensis, CIM: Camellia impressinervis, CPU: Camellia pubicosta, CAZ: Camellia azalea, CPI: Camellia pitardii, CRE: Camellia reticulata, CCR: Camellia crapnelliana, CCU: Camellia cuspidate, CPE: Camellia petelotii, CYU: Camellia yunnanensis

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