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Table 2 Results of COATS branch tests for positive selection

From: Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders

Locus

Length

Best model

Annotation

AM-TVBF-comp57563_c0_seq1.p1_RBHs

93

Non-web

26S proteasome non-ATPase regulatory subunit 14 (PSMD14)

TVBF-comp44613_c0_seq1.p1_RBHs

38

Non-web

ankyrin repeat domain-containing protein 27-like

AM-TVBF-comp45396_c0_seq1.p1_RBHs

240

Non-web

ATP synthase subunit b, mitochondrial

AM-TVBF-comp58985_c0_seq2.p1_RBHs

206

Non-web

ATP synthase subunit beta, mitochondrial

AM-TVBF-comp40348_c0_seq1.p1_RBHs

88

Non-web

Bystin-like (BYSL)

AM-TVBF-comp56406_c0_seq1.p1_RBHs

115

Non-web

Cilia- and flagella-associated protein 20

AM-TVBF-comp20801_c0_seq1.p1_RBHs

50

Non-web

E3 ubiquitin-protein ligase (MARCH1)

AM-TVBF-comp57815_c1_seq1.p1_RBHs

94

Non-web

E3 ubiquitin-protein ligase synoviolin (SYVN1)

AM-TVBF-comp53073_c0_seq1.p1_RBHs

101

Non-web

Electron transfer flavoprotein subunit beta (ETFB)

AM-TVBF-comp59149_c2_seq1.p1_RBHs

160

Non-web

MKI67 FHA domain-interacting nucleolar phosphoprotein-like

AM-TVBF-comp56762_c0_seq1.p1_RBHs

37

Non-web

N-alpha-acetyltransferase 35, NatC auxiliary subunit

AM-TVBF-comp49528_c2_seq1.p1_RBHs

122

Non-web

NEDD8-conjugating enzyme Ubc12 (UBE2M)

AM-TVBF-comp26055_c0_seq1.p1_RBHs

87

Non-web

Obg-like ATPase 1

AM-TVBF-comp36800_c0_seq1.p1_RBHs

138

Non-web

Peroxisomal biogenesis factor 19

AM-TVBF-comp53850_c1_seq1.p1_RBHs

91

Non-web

PRKCA-binding protein

TVBF-comp54710_c0_seq1.p1_RBHs

162

Non-web

Proteasome subunit alpha type-5 (PSMA5)

TVBF-comp148043_c0_seq1.p1_RBHs

149

Non-web

Putative ATP-dependent RNA helicase me31b

AM-TVBF-comp55490_c0_seq1.p1_RBHs

66

Non-web

Rab GDP dissociation inhibitor (GDI1)

TVBF-comp57571_c0_seq1.p1_RBHs

137

Non-web

Ras-related protein Rab-5

AM-TVBF-comp38265_c0_seq1.p1_RBHs\ml

102

Non-web

Ras-related protein Rap-2c

AM-TVBF-comp58242_c4_seq2.p1_RBHs

203

Non-web

Serine/threonine-protein kinase pim-3

AM-TVBF-comp56825_c0_seq1.p1_RBHs

115

Non-web

Synaptosomal-associated protein 29-like

AM-TVBF-comp58649_c1_seq1.p1_RBHs

115

Non-web

Transitional endoplasmic reticulum ATPase TER94

AM-TVBF-comp49097_c0_seq2.p1_RBHs

111

Non-web

V-type proton ATPase subunit E

AM-TVBF-comp40720_c0_seq1.p1_RBHs

102

Spiny Leg

39S ribosomal protein L10, mitochondrial (MRPL10)

AM-TVBF-comp57459_c0_seq1.p1_RBHs

264

Spiny Leg

60S acidic ribosomal protein P0 (RPLP0)

TVBF-comp58735_c0_seq1.p1_RBHs

196

Spiny Leg

DnaJ-like protein subfamily A member 1

TVBF-comp57965_c0_seq1.p1_RBHs

344

Spiny Leg

Elongation factor 2 (EEF2)

TVBF-comp49143_c0_seq2.p1_RBHs

131

Spiny Leg

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

AM-TVBF-comp59471_c5_seq1.p1_RBHs

128

Spiny Leg

Splicing factor U2AF 50 kDa subunit

TVBF-comp49479_c0_seq1.p1_RBHs

158

Spiny Leg

Synaptobrevin (YKT6)

AM-TVBF-comp54231_c0_seq1.p1_RBHs

162

Spiny Leg

TATA-box-binding protein

AM-TVBF-comp54631_c0_seq1.p1_RBHs

72

Spiny Leg

Ubiquitin-conjugating enzyme E2 Q1 (UBE2Q1)

AM-TVBF-comp55223_c0_seq1.p1_RBHs

115

Spiny Leg

WD repeat-containing protein 44-like (WDR44)

  1. Best model chosen by AIC. “Non-web” refers to a model in which selection acts on branches leading to “Spiny Leg” clade and to (Mimetidae + Malkaridae + Arkyidae). Spiny Leg refers to models where selection acts only on the Spiny Leg branch