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Table 1 The observed haplotypes and variable sites of the SRY (N = 5) and TSPY (N = 16) segments of M. fascicularis

From: Evolutionary pattern of Macaca fascicularis in Southeast Asia inferred using Y-chromosomal gene

Geographical Groups Hap. No N SRY TSPY
           1 1 1 1 1 1 1 1 1 2 2
1 2 5 5 5 6 7 8 9 9 0 1 3 3 4 6 8 9 9 0 0
5 0 9 9 9 6 4 0 7 7 9 0 0 6 2 5 6 2 5 1 2
9 5 6 7 8 2 0 2 4 8 2 8 5 5 1 1 1 4 6 0 7
Continental Sundaic Hap1 93 A A T C A T A A A A A A A A T G G G
Hap2 1            G        
Hap3 25              G      
Hap4 8         G           
Hap5 12                 C   
Hap6 4         G      G      
Hap7 1         G      G     T  
Hap8 1            G       T  
Hap9 2                  T  
Hap10 6               G     
Hap11 1              G     T  
Hap12 1    A                
Hap13 1                C    
Hap14 1   C       G      G      
Hap15 2               G    T C
Hap16 1     T          G      
Hap17 1      C              
Insular Sundaic Hap18 26 T                  
Hap19 1 T       G            
Indochinese Hap20 34 T   A C A        C C   G       
  1. A single nucleotide polymorphism (transversion mutation at np 159) was observed (in bolditalic font) differentiated the insular Sundaic group from the continental Sundaic group while four indels (np 596–598 and 974; in italic font) distinguished the Sundaic group from the Indochinese M. fascicularis