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Table 1 The observed haplotypes and variable sites of the SRY (N = 5) and TSPY (N = 16) segments of M. fascicularis

From: Evolutionary pattern of Macaca fascicularis in Southeast Asia inferred using Y-chromosomal gene

Geographical Groups

Hap. No

N

SRY

TSPY

          

1

1

1

1

1

1

1

1

1

2

2

1

2

5

5

5

6

7

8

9

9

0

1

3

3

4

6

8

9

9

0

0

5

0

9

9

9

6

4

0

7

7

9

0

0

6

2

5

6

2

5

1

2

9

5

6

7

8

2

0

2

4

8

2

8

5

5

1

1

1

4

6

0

7

Continental Sundaic

Hap1

93

A

A

–

–

–

T

C

A

T

A

A

A

A

A

A

A

A

T

G

G

G

Hap2

1

  

–

–

–

        

G

       

Hap3

25

  

–

–

–

          

G

     

Hap4

8

  

–

–

–

     

G

          

Hap5

12

  

–

–

–

             

C

  

Hap6

4

  

–

–

–

     

G

    

G

     

Hap7

1

  

–

–

–

     

G

    

G

   

T

 

Hap8

1

  

–

–

–

        

G

     

T

 

Hap9

2

  

–

–

–

              

T

 

Hap10

6

  

–

–

–

           

G

    

Hap11

1

  

–

–

–

          

G

   

T

 

Hap12

1

  

–

–

–

A

               

Hap13

1

  

–

–

–

            

C

   

Hap14

1

 

C

–

–

–

     

G

    

G

     

Hap15

2

  

–

–

–

           

G

  

T

C

Hap16

1

  

–

–

–

 

T

        

G

     

Hap17

1

  

–

–

–

  

C

             

Insular Sundaic

Hap18

26

T

 

–

–

–

                

Hap19

1

T

 

–

–

–

    

G

           

Indochinese

Hap20

34

T

 

A

C

A

   

–

  

C

C

 

G

      
  1. A single nucleotide polymorphism (transversion mutation at np 159) was observed (in bolditalic font) differentiated the insular Sundaic group from the continental Sundaic group while four indels (np 596–598 and 974; in italic font) distinguished the Sundaic group from the Indochinese M. fascicularis
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BMC Ecology and Evolution

ISSN: 2730-7182

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