High genetic diversity and strong genetic structure of Strongyllodes variegatus populations in oilseed rape production areas of China

Zhan, Hai-Xia; Hao, Zhong-Ping; Tang, Rui; Zhu, Li-Ni; Zhou, Jing-Jiang; Hou, Shu-Min

doi:10.1186/s12862-021-01752-6

Table 1 Genetic diversity indices and neutrality test for mitochondrial COI and Cytb markers in all analyzed Strongyllodes variegatus populations

From: High genetic diversity and strong genetic structure of Strongyllodes variegatus populations in oilseed rape production areas of China

Marker	Population code	Region^a	N	S	Hn	Hd	π	k	Tajima's D	P	Fu's Fs	P
COI	GDQH		34	4	5	0.702	0.00166	1.082	0.263	NS	− 0.286	NS
	HZGS		34	8	9	0.702	0.00192	1.255	− 1.059	NS	− 3.893	**
	ZYGS		24	5	6	0.649	0.00121	0.790	− 1.188	NS	− 2.707	*
	GYSC		30	14	14	0.855	0.00378	2.467	− 1.008	NS	− 6.799	***
	HZSX		30	14	15	0.913	0.00462	3.018	− 0.487	NS	− 6.672	***
	AKSX		35	13	13	0.852	0.00431	2.810	− 0.351	NS	− 3.961	*
	FJCQ		30	11	14	0.857	0.00328	2.138	− 0.740	NS	− 7.898	***
	ESHB		8	6	6	0.893	0.00257	1.679	− 1.280	NS	− 3.114	**
	LCHB		32	9	11	0.764	0.00320	2.085	− 0.206	NS	− 3.819	*
	AQAH		37	13	11	0.580	0.00146	0.949	− 2.201	***	− 8.187	***
	LAAH		21	4	5	0.424	0.00072	0.467	− 1.654	*	− 3.127	***
	HFAH		34	6	6	0.574	0.00119	0.775	− 1.306	NS	− 2.271	NS
	CHAH		26	5	6	0.520	0.00092	0.597	− 1.543	*	− 3.524	***
	NJJS		31	5	4	0.458	0.00095	0.619	− 1.367	NS	− 0.697	NS
	ZJJS		31	5	6	0.628	0.00118	0.770	− 1.041	NS	− 2.417	*
		NW	92	14	15	0.713	0.00183	1.193	− 1.565	*	− 9.255	***
		CC	165	30	43	0.856	0.00397	2.587	− 1.471	*	− 26.732	***
		CE	80	20	20	0.544	0.00113	0.736	− 2.132	**	− 21.274	***
	Total		337	45	70	0.865	0.00427	2.786	− 1.628	*	− 25.887	***
Cytb	GDQH		34	6	6	0.708	0.00417	1.758	0.547	NS	0.186	NS
	HZGS		34	4	4	0.469	0.00285	1.198	0.558	NS	1.002	NS
	ZYGS		24	3	4	0.583	0.00161	0.678	− 0.394	NS	− 0.714	NS
	GYSC		30	14	14	0.833	0.00539	2.271	− 1.192	NS	− 7.424	***
	HZSX		30	11	11	0.832	0.00472	1.986	− 0.916	NS	− 4.300	*
	AKSX		35	13	13	0.810	0.00455	1.916	− 1.258	NS	− 6.437	**
	FJCQ		30	9	10	0.791	0.00300	1.262	− 1.381	NS	− 5.530	***
	ESHB		8	2	3	0.464	0.00119	0.500	− 1.310	NS	− 0.999	NS
	LCHB		32	18	15	0.752	0.00359	1.51	− 2.252	***	− 12.320	***
	AQAH		37	8	9	0.718	0.00255	1.075	− 1.273	NS	− 4.442	**
	LAAH		21	3	4	0.71	0.00215	0.905	0.223	NS	− 0.187	NS
	HFAH		34	9	9	0.784	0.00251	1.239	− 1.322	NS	− 3.954	**
	CHAH		26	7	9	0.726	0.00272	1.145	− 1.151	NS	− 5.076	***
	NJJS		31	9	9	0.776	0.00347	1.462	− 1.082	NS	− 3.413	*
	ZJJS		31	8	9	0.697	0.00215	0.903	− 1.655	*	− 5.812	**
		NW	92	9	9	0.638	0.00354	1.492	− 0.393	NS	− 1.395	NS
		CC	165	33	43	0.826	0.00436	1.837	− 1.992	**	− 27.537	***
		CE	80	20	24	0.741	0.00276	1.162	− 1.799	*	− 21.480	***
	Total			40	67	0.834	0.00479	2.015	− 1.819	**	− 26.759	***
COI + Cytb		NW	92	23	23	0.800	0.00250	2.686	− 1.208	NS	− 11.042	***
		CC	165	63	82	0.957	0.00412	4.423	− 1.847	**	− 25.523	***
		CE	80	40	48	0.881	0.00177	1.898	− 2.139	**	− 27.540	***

For each population, the number of individuals (N), the number of variable sites (S), number of haplotypes (Hn), haplotype diversity (Hd), nucleotide diversity (π), average number of nucleotide differences (k) and Tajima's D and Fu's Fs test statistics for selective neutrality are given
Values are significant at *P ≤ 0.05; **P ≤ 0.01; ***P ≤ 0.001; NS, not significant
^aRegions as defined in Fig. 1

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