Genetic and morphological divergence among three closely related Phrynocephalus species (Agamidae)

Hu, Chao-Chao; Wu, Yan-Qing; Ma, Li; Chen, Yi-Jing; Ji, Xiang

doi:10.1186/s12862-019-1443-y

BMC Ecology and Evolution

Table 1 Sampling locality information, genetic diversity and demographic statistics for partial ND4 sequences

From: Genetic and morphological divergence among three closely related Phrynocephalus species (Agamidae)

Locality	N	Longitude (°)	Latitude (°)	Elevation (m)	Nhap	Haplotype diversity (h ± SD)	Nucleotide diversity (π ± SD) × 10³	Tajima’s D	Fu’s Fs	SSD	Rag
PG05	16	101.13	35.80	3191	5	0.71 ± 0.09	15.17 ± 11.45	−2.37^***	6.84	0.01	0.03
PG06	16	101.03	35.82	3116	3	0.61 ± 0.09	1.11 ± 0.22	0.66	0.42	0.01	0.12
PG07	16	100.64	35.76	3248	1	–	–	–	–	–	–
PG08	11	100.56	35.70	3207	2	0.44 ± 0.13	1.28 ± 0.39	0.85	2.01	0.16	0.70
PG09	16	101.02	35.82	3126	6	0.78 ± 0.07	4.71 ± 0.60	0.26	0.61	0.06	0.12
PG10	16	100.90	35.94	2675	3	0.43 ± 0.13	5.15 ± 1.48	1.10	5.00	0.15	0.44
PG12	16	101.08	35.70	3509	5	0.53 ± 0.14	1.18 ± 0.43	−1.03	−1.98^*	0.01	0.11
PG13	22	101.07	35.51	3340	6	0.77 ± 0.06	5.42 ± 0.37	1.20	1.83	0.09	0.16
PG15	16	100.70	35.64	2995	6	0.82 ± 0.07	3.86 ± 0.93	−0.46	0.06	0.29^*	0.05
PP01	15	101.45	36.08	2273	2	0.13 ± 0.11	0.19 ± 0.16	−1.16	−0.65	0.04	0.56
PP02	15	101.37	36.01	2278	2	0.42 ± 0.11	6.13 ± 1.65	1.38	8.29	0.24^*	0.69
PP03	16	101.24	36.08	2259	2	0.53 ± 0.06	6.91 ± 0.72	2.73	9.28	0.55^***	0.78
PP04	16	101.32	35.94	2578	1	–	–	–	–	–	–
PP11	16	101.06	35.87	2930	5	0.77 ± 0.07	5.77 ± 1.23	0.72	2.31	0.07	0.18
PP19	16	100.68	36.13	2703	4	0.52 ± 0.13	1.50 ± 0.61	−1.48	−0.21	0.01	0.09
PP21	11	100.73	36.20	2602	3	0.35 ± 0.17	2.29 ± 1.16	−1.40	1.55	0.11	0.49
PP22	16	100.79	36.70	3228	4	0.35 ± 0.15	16.67 ± 11.22	−2.24^***	9.71	0.08	0.49
PP23	16	100.86	36.85	3237	3	0.50 ± 0.12	1.40 ± 0.68	−1.20	0.90	0.02	0.17
PP24	15	100.75	36.89	3307	3	0.51 ± 0.12	19.88 ± 3.89	2.00	13.42	0.42^***	0.55
PP25	5	100.58	37.09	3255	3	0.70 ± 0.22	15.79 ± 8.96	−1.24	3.98	0.14	0.23
PP26	16	99.78	37.20	3251	3	0.49 ± 0.12	1.40 ± 0.68	−1.20	0.90	0.02	0.17
PP27	14	100.01	37.27	3247	5	0.66 ± 0.12	1.54 ± 0.45	−1.14	−1.50	0.004	0.05
PP28	16	101.06	36.28	3354	3	0.51 ± 0.13	0.82 ± 0.24	−0.19	−0.18	0.02	0.17
PV16	16	100.28	36.03	3100	2	0.13 ± 0.11	0.37 ± 0.31	−1.50^*	0.18	0.02	0.80
PV17	16	99.89	35.81	3700	5	0.72 ± 0.10	1.43 ± 0.30	−0.60	−1.49	0.02	0.16
PV18	15	100.42	36.11	2987	4	0.62 ± 0.12	1.06 ± 0.27	−0.64	−1.04	0.03	0.20
PV20	16	100.62	36.21	2793	2	0.13 ± 0.11	0.18 ± 0.16	−1.16	−0.70	0.04	0.58
PV29	15	101.78	36.67	3200	6	0.76 ± 0.10	52.49 ± 10.15	2.08	12.55	0.14	0.14
Total	426				67	0.96 ± 0.01	34.43 ± 16.77	0.30	0.79	0.01	0.004
PG	145				29	0.92 ± 0.01	7.48 ± 4.04	−2.19	−6.17	0.003	0.01
PP	203				30	0.94 ± 0.01	23.07 ± 11.44	−0.51	5.07	0.02	0.01^*
PV	78				18	0.86 ± 0.02	64.23 ± 31.19	3.53	27.03	0.05^***	0.04^***

N sample size (number of individuals), Nhap number of haplotypes, Fu’s Fs statistics of Fu’s Fs test, Tajima’s D statistics of Tajima’s D test, SSD sum of square deviation, Rag Harpending’s raggedness index. PG P. guinanensis, PP P. putjatia, PV P. vlangalii
^* P < 0.05; ^*** P < 0.001

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