Table 1 Summary of loci/amplicons sequenced
From: Immunogenetic response of the bananaquit in the face of malarial parasites
| Â | Â | Â | GROUP | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | UNI | LA07 | INF | |||||||||
|  |  |  | n = 90 (45 individuals) | n = 82 (41 individuals) | n = 26 (13 individuals) | |||||||||
| Â | Â | Total # Alleles | # Alleles | # Unique Alleles | Amplicon Depth (# reads) | Avg. Allele Depth | # Alleles | # Unique Alleles | Amplicon Depth (# reads) | Avg. Allele Depth | # Alleles | # Unique Alleles | Amplicon Depth (# reads) | Avg. Allele Depth |
LOCUS | TLR1A | 7 | 4 | 0 | 3310 | 828 | 5 | 0 | 1711 | 342 | 5 | 2 | 2709 | 542 |
TLR2B | 14 | 5 | 0 | 2467 | 493 | 7 | 2 | 2387 | 341 | 7 | 7 | 1465 | 209 | |
TLR7 | 7 | 5 | 0 | 3216 | 643 | 5 | 0 | 3741 | 748 | 7 | 2 | 3695 | 528 | |
MHC1-UAA-1 | 3 | 3 | 0 | 3816 | 1272 | 1 | 0 | 3442 | 3442 | 3 | 0 | 3616 | 1205 | |
MHC1-UAA-2 | 4 | 2 | 0 | 4382 | 2191 | 4 | 0 | 3875 | 969 | 4 | 0 | 2794 | 699 | |