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Table 2 The nucleotide diversity of LcDHN-like gene in Liriodendron populations

From: Interspecies evolutionary divergence in Liriodendron, evidence from the nucleotide variations of LcDHN-like gene

  Exon-1 Exon-2 Exon 5′UTR Intron 3′UTR Total
Liriodendron Size 201 339 540 21 508 112 1181
SNPs 42 60 102 2 113 16 233
Indels 21 63 84 0 63 5 152
π 0.02529 0.03125 0.02890 0.00061 0.03030 0.02776 0.02881
θw 0.03695 0.03442 0.03542 0.01508 0.04021 0.02368 0.03585
L. chinense Size 186 291 477 21 474 110 1082
SNPs 12 18 30 2 55 5 92
Indels 0 12 12 0 17 1 30
π 0.00573 0.00640 0.00613 0.00094 0.01410 0.00964 0.00986
θw 0.01097 0.01097 0.01097 0.01619 0.02046 0.00780 0.01487
L. tulipifera Size 201 339 540 21 506 111 1178
SNPs 32 44 76 0 75 10 161
Indels 21 51 72 0 54 3 129
π 0.03237 0.03757 0.03891 0 0.03473 0.02572 0.03348
θw 0.03377 0.02902 0.03085 0 0.03152 0.01759 0.02916
  1. SNPs single nucleotide polymorphism sites, Indels insertion or deletion sites, π nucleotide diversity, θw theta (per site) from S