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Table 1 List of primers used for gene expression analysis by quantitative real-time PCR (qPCR)

From: Vertebrate SLRP family evolution and the subfunctionalization of osteoglycin gene duplicates in teleost fish

Gene name

Primer sequence (5’→3’)

Amplicon (bp)

Ta (°C)

Efficiency

R2

ogn1

F: GAAGTCTCTCTTATTCACCTGT

138

60

92.4

0.99

R: CAAAGGGTCACTGAAGTATCCA

ogn2

F: TGTTATTCTCCCATGGATCCTG

125

60

100

0.99

R: GATCCCCCGCTGCATCTGTGG

ogn1

F: GAAGTCTCTCTTATTCACCTGT

544

60

na

na

R: GTTGTTGGCATTGAAGGAT

ogn2

F: ATGATGCAACTGAGGACTTTAA

392

60

na

na

R: GCTCCATCTTCAATCTCAG

op

F: AAAACCCAGGAGATAAACTCAAGACAACCCA

153

68

95.3

0.99

R: AGAACCGTGGCAAAGAGCAGAACGAA

  1. Gene name, primer sequence, amplicon length (base pairs, bp), annealing temperature (Ta, ºC) and efficiency (%) and R2 are indicated for each primer pair. For ef1α, rps18 and ß-actin, the sequences and specific conditions have previously been reported [61]. F forward, R reverse, na not applicable. The longer ogn amplicons were used to generate the standards for qPCR