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Table 6 Pairwise XtX values and outlier locus information for each of the eight marine-freshwater comparisons. LG is linkage group, although scaffolds are also included. Position refers to the nucleotide position along the linkage group

From: Contemporary ancestor? Adaptive divergence from standing genetic variation in Pacific marine threespine stickleback

LG Position CA01 (6.02) CA02 (5.25) CA03 (4.92) OR01 (5.85) OR02 (5.65) WA01 (5.34) BC01 (5.47) AK01 (5.10) Total Gene name Marine
1 4996549      6.16     1   
1 10025443    5.79     5.79 5.51 3   
1 10025526    5.65     5.65 5.59 3   
1 11533385         5.73 1   
1 11653098    4.98       1   YES
1 11653099    5.02       1   YES
1 20898321      9.04     1   
1 21511402         6.15 1   YES
2 7863977    5.22    5.49   5.69 3 gpc51  
2 8625488 6.34 7.66 5.89 8.34   6.29 5.89 7.45 7 novel YES
2 9813668 6.59 5.76 7.36 7.24   8.54 7.36 6.07 7 tub  
4 7681527   6.24   7.18    7.30 7.42 4   
4 7713883   5.80 7.46 7.13   6.06 7.46 6.03 6   
4 7713914   6.01 7.21 6.99   5.99 7.21 5.94 6   
4 7713937     5.93 7.24     2   
4 7728366   6.25   6.87   6.22 7.53 7.71 5   
4 7728396   6.03   6.83   5.98 7.60 7.57 5   
4 8322977     5.59      1   
4 8322992     5.69      1   
4 8323014         5.68 1   YES
4 8585549     7.19   6.44 7.36 7.47 4   YES
4 11606261       6.16    1   
4 12214334       6.59 7.41 5.84 3   
4 14370896   5.78   6.32   6.53 5.61 6.15 5   
4 14622355       6.48   5.90 2   
4 14622379     5.51   6.51   5.74 3   
4 14622421       6.34   6.06 2   
4 15435194       6.48   7.45 2 tenm1  
4 16418859        7.46 6.00 2   
4 17168113     5.98 7.20     2   
4 20971949     6.91 6.38     2   
7 6070847   5.36 5.37    5.68    3   
7 8961600    5.23       1   
7 8961654    5.27       1   
7 10052612      5.90     1 NRXN2 (1 of many)  
7 10226709     5.91      1 S100P  
7 10226775 6.44 5.48 5.64 6.67   6.69 5.64 7.46 7 S100P  
7 12677333 6.57 7.81 5.56 6.89   8.56 5.56 7.45 7   
7 12677411   5.64 5.77 7.65 9.61 6.31 5.77 5.33 7   
7 12677426 6.59 7.70 5.53 6.74   8.43 5.53 7.80 7   
7 12677430   7.57 5.34 6.97   8.25   7.52 5   
7 12677436 6.50 7.60 5.49 6.85   8.33 5.49 7.44 7   
7 12677445 6.47 7.56 5.34 6.91   8.39   7.46 6   
7 15234950     5.90      1   
7 21461506      6.79     1   YES
7 22693167      5.81     1   
8 8728904       6.48 7.33 7.34 3 csnk1g2a YES
9 17327750      5.93     1   
9 17335552       5.68 5.49   2   
11 8223470    5.06       1   
11 11238927      6.02     1   
12 2181823       6.28   5.58 2 OVGP1  
12 2181850   5.35     6.28 5.70 6.12 4 OVGP1  
12 9470238         5.23 1 lzic  
12 9470277   5.35 5.56     5.56   3 lzic  
12 12295357 6.67 7.58 5.66 5.90   6.82 5.66 7.60 7   
12 12295366 6.47 7.73 5.73 5.93   6.81 5.73 7.55 7   
12 13222579   7.58     6.70   7.62 3   
12 13222580   5.51   7.59 9.68    5.51 4   
12 13222581   5.55   7.85 9.82    5.53 4   
12 13901004   5.55 5.78     5.78   3   
12 13901024   5.54 5.86 5.67    5.86   4   
16 6336339   5.61        1 novel  
16 6336342 6.46 6.04 4.97 6.52 7.19 6.79   5.71 7 novel  
16 12118969    5.16       1   YES
16 12119050    4.97       1   
17 6414038    5.47   5.88 5.64 5.47   4   
18 5648550 6.44 5.87 7.45 5.86 5.70 8.56 7.45 7.42 8   
18 5690662 6.51 6.03 5.47 6.14 6.33 6.77 5.47 5.78 8   
19 14803674        7.55 6.29 2   
20 5871717    5.31 7.67   6.61   6.07 4 novel  
20 5995635 6.46 7.69 7.49 7.42   6.71 7.49 5.88 7   
20 5995636 6.51 7.71 7.45 7.47   7.06 7.45 5.97 7   
20 7174610 6.58 5.93 7.39 7.36 5.95 6.13 7.39 5.91 8   
20 7634239       6.40    1   
20 7634241       6.15 5.56 5.68 3   
20 9060756    5.48 6.79 8.65 5.39 5.48   5   
20 10061253     5.56   6.73 5.67 5.75 4   
20 10061286     5.77   6.65 5.54 7.49 4   YES
20 11455928         5.32 1   
20 11455931         5.40 1   
20 11456012         5.50 1   
21 2815735   5.45 5.74     5.74 5.38 4   
21 2815747      6.21     1   
21 2957590    4.94       1 RAMP3  
21 6689655       6.13   5.90 2   
21 6689742       6.01   5.63 2   
27 3491221   5.57 5.85     5.85 5.51 4   
27 3524707 6.49 7.60 7.43 7.34   8.42 7.43 7.44 7 novel  
27 4397445 6.32 5.66 7.39 7.12   6.55 7.39 7.52 7   
27 4468817   7.64 7.24 6.82   8.43 7.24 7.51 6   
37 23177     6.08   6.05   5.72 3   YES
37 253614     5.83   6.44 5.68 5.82 4   YES
47 326567    5.38    5.43    2   
47 326633    5.28    5.44    2   
47 579296   5.63 7.56 5.79   6.56 7.56 5.69 6   
47 579344   5.77 7.41 5.84   6.68 7.41 5.76 6   
  1. CA01 CA02 etc. identifies the marine group that was compared to the Brannen Lake British Columbia freshwater population. The number in brackets () after each population identifier is the XtX threshold value used for that marine-freshwater comparison above which a locus was flagged as an outlier. If the locus was an outlier in that comparison its XtX value is given; otherwise the cell is blank. Total refers to the number of comparisons for which that locus was flagged as an outlier. If Marine = YES that same locus was also flagged as an outlier in the marine environment