From: The molecular evolutionary dynamics of oxidative phosphorylation (OXPHOS) genes in Hymenoptera
Gene Symbol | Complex | Median Amino acid Substitution Rate differences | PAML Branch Model | PAML Branch-site Model | MEME | TreeSAAP | Sites shared between methods | ||
---|---|---|---|---|---|---|---|---|---|
Hymenoptera - Coleoptera | Hymenoptera - Lepidoptera | Hymenoptera - Diptera | |||||||
mt:ND1 | 1 | −0.37 | −0.01 | 0.14 | 0 | 1 | 0 | 0 | |
mt:ND2 | 1 | 1.91 | 2.34 | 2.28 | 0 | 2 | 2 | 0 | |
mt:ND3 | 1 | −0.13 | −0.18 | 0.25 | Lower | 0 | 0 | 1 | 0 |
mt:ND4 | 1 | 0.76 | 0.71 | 0.81 | Higher | 0 | 0 | 0 | 0 |
mt:ND4L | 1 | 1.09 | 0.59 | 1.15 | 0 | 1 | 0 | 0 | |
mt:ND5 | 1 | 0.13 | 0.30 | 0.33 | Lower | 0 | 1 | 4 | 0 |
mt:ND6 | 1 | 1.87 | 3.33 | 3.81 | 0 | 0 | 0 | 0 | |
mt:Cyt-b | 3 | 0.60 | 0.58 | 0.51 | 0 | 1 | 3 | 0 | |
mt:CoI | 4 | 0.27 | 0.31 | 0.21 | Higher | 0 | 1 | 0 | 0 |
mt:CoII | 4 | 0.12 | 0.22 | 0.05 | 0 | 0 | 0 | 0 | |
mt:CoIII | 4 | −0.60 | −0.07 | −0.37 | Lower | 0 | 0 | 1 | 0 |
mt:ATP6 | 5 | 0.16 | 0.12 | 0.30 | 0 | 2 | 1 | 0 | |
mt:ATP8 | 5 | 2.38 | 2.14 | 2.37 | 0 | 0 | 0 | 0 | |
ND-42 | 1 | 0.97 | 1.31 | 1.10 | Higher | 14 | 2 | 14 | 5 |
ND-39 | 1 | 0.15 | 0.08 | 0.31 | Higher | 11 | 2 | 2 | 2 |
ND-24 | 1 | 0.52 | 0.24 | 0.35 | Higher | 12 | 0 | 3 | 1 |
ND-75 | 1 | 0.14 | 0.01 | 0.06 | 4 | 1 | 0 | 0 | |
ND-B22 | 1 | 0.35 | 0.22 | 0.74 | Higher | 0 | 0 | 2 | 0 |
ND-SGDH | 1 | 0.24 | 0.07 | 0.14 | Higher | 2 | 1 | 0 | 1 |
ND-B17.2 | 1 | 0.33 | 0.68 | 0.12 | Higher | 4 | 0 | 0 | 0 |
ND-MLRQ | 1 | 0.38 | 0.78 | 0.37 | Higher | 0 | 1 | 0 | 0 |
ND-23 | 1 | 0.12 | 0.06 | 0.10 | Higher | 0 | 0 | 0 | 0 |
ND-B12 | 1 | −0.13 | −0.43 | 0.00 | Higher | 0 | 0 | 0 | 0 |
ND-B16.6 | 1 | 0.80 | 0.55 | 0.58 | Higher | 5 | 1 | 1 | 0 |
ND-B14.5B | 1 | 1.12 | 2.09 | 1.33 | 0 | 0 | 0 | 0 | |
ND-B18 | 1 | 0.61 | 0.17 | 1.20 | Higher | 0 | 0 | 1 | 0 |
ND-PDSW | 1 | 0.48 | 0.32 | 0.64 | Higher | 1 | 0 | 0 | 0 |
ND-18 | 1 | 0.68 | 0.70 | 0.66 | Higher | 0 | 0 | 6 | 0 |
ND-30 | 1 | 0.20 | 0.06 | 0.05 | Higher | 0 | 0 | 0 | 0 |
UQCR-Q | 3 | 0.19 | 0.36 | 0.48 | Higher | 0 | 1 | 1 | 1 |
COX5B | 4 | −0.20 | −0.18 | −0.08 | 2 | 0 | 0 | 0 | |
ATPsynF | 5 | 0.45 | 0.42 | 0.49 | Higher | 0 | 0 | 0 | 0 |
ATPsynγ | 5 | 0.12 | 0.11 | 0.30 | 0 | 2 | 0 | 0 | |
blw | 5 | −0.04 | −0.04 | −0.04 | 0 | 2 | 0 | 0 | |
ATPsynG | 5 | 1.14 | 0.12 | 0.90 | Higher | 0 | 0 | 0 | 0 |
ATPsynC | 5 | 0.02 | −0.02 | 0.02 | 0 | 0 | 0 | 0 |