Table 3 Top hits of 16 L. vannamei TE families in querying against chromosome and HTGS databases
From: Close ecological relationship among species facilitated horizontal transfer of retrotransposons
| Â | Taxon | Organism | E-value | Identity (%) | Query coverage (%) |
|---|---|---|---|---|---|
BEL-1_LVa-I | Brachiopoda | Lingula anatina | 8.63e-30 | 70 | 6 |
Gypsy-14_LVa-I | Mollusca | Lottia gigantea | 9.36e-29 | 70 | 6 |
Gypsy-17_LVa | Actinopterygii | Danio rerio | 3.21e-11 | 84 | 3 |
Gypsy-3_LVa-LTR | Actinopterygii | Salmo salar | 1.00e-43 | 70 | 30 |
Gypsy-4_LVa-I | Nematoda | Trichinella spiralis | 1.90e-23 | 72 | 7 |
Penelope-6_LVa | Arthropoda | Limulus polyphemus | 7.99e-14 | 73 | 6 |
RTE-1_LVa | Actinopterygii | Oryzias latipes | 1.86e-28 | 66 | 22 |
RTE-2_LVa | Echinodermata | Strongylocentrotus purpuratus | 1.31e-45 | 65 | 21 |
RTE-3_LVa | Echinodermata | Strongylocentrotus purpuratus | 6.34e-48 | 80 | 7 |
Gypsy-18_LVa, Gypsy-5_LVa-I , Nimb-1_LVa, Nimb-2_LVa, Penelope-1_LVa, Penelope-3_LVa, Penelope-8_LVa have no significant hit (E-value < 1e-10) | |||||