Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)

Zhang, Jie; Yao, Jian-Ting; Sun, Zhong-Min; Fu, Gang; Galanin, Dmitry A.; Nagasato, Chikako; Motomura, Taizo; Hu, Zi-Min; Duan, De-Lin

doi:10.1186/s12862-015-0517-8

Table 1 The summary of genetic diversity in Saccharina japonica

From: Phylogeographic data revealed shallow genetic structure in the kelp Saccharina japonica (Laminariales, Phaeophyta)

POP	N	COI				trnW-L				COI + trnW-L
POP	N	S	Pi	Hd	h	S	Pi	Hd	h	S	Pi	Hd	h
Japan	231	19	0.00067	0.47149	15	16	0.00131	0.39029	16	35	0.00079	0.72528	30
1	27	5	0.00041	0.44160	5	3	0.00113	0.33333	4	8	0.00055	0.50427	7
2	6	1	0.00035	0.53333	2	0	0.00000	0.00000	1	1	0.00028	0.53333	2
3	22	0	0.00000	0.00000	1	2	0.00050	0.17749	3	2	0.00010	0.17749	3
4	10	2	0.00047	0.35556	2	2	0.00110	0.37778	3	4	0.00059	0.64444	4
5	24	2	0.00056	0.43116	2	1	0.00023	0.08333	2	3	0.00050	0.48913	3
6	21	1	0.00006	0.09524	2	1	0.00071	0.25714	2	2	0.00019	0.33810	3
7	28	8	0.00191	0.68254	5	1	0.00039	0.14021	3	10	0.00162	0.74339	7
8	26	2	0.00026	0.38462	3	1	0.00021	0.07692	2	3	0.00025	0.39692	4
9	7	0	0.00000	0.00000	1	3	0.00421	0.76190	3	3	0.00081	0.76190	3
10	28	0	0.00000	0.00000	1	1	0.00140	0.50794	2	1	0.00027	0.50794	2
11	32	1	0.00021	0.31452	2	1	0.00134	0.48387	2	2	0.00042	0.55645	3
Russia	267	16	0.00009	0.10935	14	9	0.00159	0.52984	9	25	0.00038	0.58537	22
12	28	1	0.00005	0.07143	2	2	0.00039	0.14021	3	3	0.00011	0.20635	4
13	24	2	0.00011	0.16304	3	1	0.00023	0.08333	2	3	0.00013	0.23913	4
14	29	2	0.00013	0.19704	3	0	0.00000	0.00000	1	2	0.00011	0.19704	3
15	28	2	0.00009	0.14021	3	2	0.00090	0.31481	3	4	0.00025	0.38095	5
16	21	2	0.00012	0.18571	3	1	0.00026	0.09524	2	3	0.00015	0.27143	4
17	30	1	0.00004	0.06667	2	3	0.00139	0.38391	3	4	0.00030	0.39540	4
18	16	1	0.00008	0.12500	2	1	0.00035	0.12500	2	2	0.00013	0.24167	3
19	26	1	0.00005	0.07692	2	2	0.00042	0.07692	2	3	0.00012	0.15077	3
20	29	5	0.00023	0.13547	3	0	0.00000	0.00000	1	5	0.00018	0.13547	3
21	30	0	0.00000	0.00000	1	0	0.00000	0.00000	1	0	0.00000	0.00000	1
22	6	0	0.00000	0.00000	1	2	0.00331	0.60000	2	2	0.00063	0.60000	2
Korea	27	5	0.00033	0.33333	4	0	0.00000	0.00000	1	5	0.00027	0.03333	4
23	27	5	0.00033	0.33333	4	0	0.00000	0.00000	1	5	0.00027	0.03333	4
China	87	1	0.00028	0.43304	2	3	0.00146	0.49051	3	4	0.00051	0.55306	5
24	27	0	0.00000	0.00000	1	0	0.00000	0.00000	1	0	0.00000	0.00000	1
25	30	0	0.00000	0.00000	1	3	0.00149	0.42069	3	3	0.00028	0.42069	3
26	30	1	0.00012	0.18621	2	1	0.00066	0.23908	2	2	0.00023	0.24598	3
Total	612	35	0.00043	0.40824	30	20	0.00191	0.56200	22	55	0.00072	0.72165	53

N number of sequences, S number of segregating sites, Pi nucleotide diversity, Hd haplotype diversity, h number of haplotypes in each population. The bold indicated that the summary genetic diversity of all populations in this regions

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