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Table 1 The mean number of segregating sites and estimates of synonymous and non-synonymous genetic diversity for each cluster across the seven genetic regions

From: Varying influences of selection and demography in host-adapted populations of the tick-transmitted bacterium, Anaplasma phagocytophilum

  Synonymous sites Non-synonymous sites
Cluster Sites 1 SS 2 π 3 θ w 4 Sites 1 SS 2 π 3 θ w 4
1 95.6 (3.0) 11.1 (4.3) 0.0131 (0.0047) 0.0196 (0.0079) 315.4 (19.8) 5.4 (1.8) 0.0008 (0.0005) 0.0028 (0.0008)
2 95.6 (3.1) 11.4 (10.8) 0.0379 (0.0477) 0.0354 (0.0346) 315.4 (19.7) 2.7 (1.6) 0.0015 (0.0011) 0.0025 (0.0013)
3 96.3 (3.0) 1.6 (1.1) 0.0056 (0.0044) 0.0046 (0.0034) 314.7 (19.1) 0.9 (1.2) 0.0008 (0.0010) 0.0008 (0.0011)
  1. 1The average number of sites per genetic region that were classified as either synonymous or non-synonymous respectively.
  2. 2The average number of segregating sites across the seven genetic regions.
  3. 3The average pairwise difference per site [18,19].
  4. 4Watterson’s estimator of genetic diversity based on the number of segregating sites [20].
  5. () Standard deviations are indicated in parentheses.