Table 1 Summary statistics for the anchored-enriched (AHE) loci and transcriptome mining (TM) exons at different taxonomic levels and excluding non-informative loci

Anchored-enriched (AHE)

All samples

44

415

1458

250

534

152

6

52.1

99.6

92.1

96.5

Carlia ¹

5

264

1458

250

541

36

1

2.3

99.0

94.1

99.0

C. rubrigularis ¹

4

253

1458

250

540

36

1

2.2

99.9

94.5

99.4

Lampropholis

13

414

1458

250

534

44

1

15.0

99.7

95.0

98.0

La. coggeri ¹

6

314

1458

250

543

13

1

3.1

99.9

97.8

99.4

Niveoscincus ¹

5

207

1458

250

538

8

1

1.6

99.7

96.7

98.9

Saproscincus

9

412

1458

250

535

45

1

6.7

99.9

90.1

98.4

S. basiliscus ¹

5

221

1458

250

555

13

1

2.1

99.9

95.6

99.5

Transcriptome mining (TM)

All taxa

11

1650

3249

101

337

132

1

19.2

99.7

90.1

96.3

TM data pruned to number of AHE loci (highest PICs)

All taxa

11

415

3249

163

617

152

23

41.3

99.1

95.3

90.1

TM data pruned to number of AHE loci (randomly sampled)

All taxa

11

415

2480

103

337

120

1

19.2

99.6

90.8

96.3

AHE data pruned to TM taxon sampling

All taxa

11

415

1458

250

534

96

1

25.4

99.7

91.8

96.3