|
Partitions
|
Base pairs
|
Variable
|
Informative
|
Subs. model
|
m(ratemult)
|
Alpha(Γ shape)
|
Tree likelihood
|
|---|
|
Gene strategy
| | | | | | | |
|
COI
|
1487
|
651
|
486
|
GTR + G
|
1.569
|
0.245
|
−18584.5
|
|
CAD
|
850
|
319
|
218
|
HKY + G
|
0.749
|
0.282
|
−4766.8
|
|
EF1a
|
1240
|
432
|
290
|
GTR + G
|
0.768
|
0.222
|
−21045.8
|
|
GAPDH
|
691
|
264
|
196
|
GTR + G
|
0.864
|
0.232
|
−13990.5
|
|
RPS5
|
617
|
228
|
183
|
GTR + G
|
0.694
|
0.198
|
−11920.2
|
|
WINGLESS
|
400
|
191
|
130
|
K80 + G
|
0.848
|
0.34
|
−8617.8
|
|
“Bin” strategy
| | | | | | | |
|
BIN1
|
2727
|
-
|
-
|
F81
|
0.0002
|
-
|
-
|
|
BIN2-BIN10
|
652
|
-
|
-
|
GTR
|
0.57
|
-
|
-
|
|
BIN11
|
1269
|
-
|
-
|
GTR + G
|
1.457
|
1.601
|
-
|
|
BIN12
|
637
|
-
|
-
|
GTR + G
|
4.828
|
4.389
|
-
|
- Number of variable and phylogenetically informative sites in our Calisto data are shown by gene partition. Substitution model was selected based on BIC calculations in jModelTest [41]. Rate multiplier (m) and Gamma-shape (alpha) parameters are from BI whereas the tree likelihood for each gene partition are from the dating analysis using normal distribution for the calibration points and the birth-death process. Other dating analyses have similar values as shown in tree likelihood.
