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Table 1 Genome data sets used in the present study

From: Evolution and genomic organization of muscle microRNAs in fish genomes

Species

Common name

Scaffold or chromosome

Genome (Mb)

Assembly

Danio rerio

Zebrafish

Chromosome

1505

Zv9, April 2010

Oryzias latipes

Medaka

Chromosome

700

HdrR, Oct 2005

Gasterosteus aculeatus

Stickleback

Scaffold

446

BROAD S1, Feb 2006

Tetraodon nigroviridis

Tetraodon

Chromosome

342

TETRAODON 8.0, Mar 2007

Takifugu rubripes

Fugu

Scaffold

393

FUGU 4.0, Jun 2005

Oreochromis niloticus

Nile tilapia

Scaffold

815

Orenil1.0, Jan 2011

Lepisosteus oculatus

Spotted gar

Chromosome

945

LepOcu1, Jan 2012

Latimeria chalumnae

Coelacanth

Scaffold

2860

LatCha1, Sep 2011

Callorhinchus milii

Elephant shark

Scaffold

937

Callorhinchus_milii-6.1.3, Jan 2014

  1. Note - the genomes of Gadus morhua (cod), Xiphophorus maculatus (platyfish) and Astyanax mexicanus (cave fish) were not used here due to their uncompleted assemblies and annotations currently available.