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Table 1 GlnA protein sequence distribution and similarity in the Actinobacteria

From: Glutamine synthetase sequence evolution in the mycobacteria and their use as molecular markers for Actinobacteriaspeciation

  Sequence accesion number, length (amino acids) and percentage similarity
Organism glnA1 glnA2 glnA3 glnA4
Acidothermus cellulolyticus 11B YP_872682 (474 aa) 72% YP_872678 (453 aa) 68% YP_872678 (453 aa) 30% YP_873609 (446 aa) 61%
Arthrobacter sp. FB24 YP_947504 (474 aa) 63% YP_947491 (446 aa) 65% YP_831086 (446 aa) 29% YP_831086 (446 aa) 31%
Bifidobacterium longum NCC2705 NP_696248 (478 aa) 62% NP_696466 (445 aa) 60% NP_696466 (445 aa) 27% NP_696466 (445 aa) 29%
Brevibacterium linens BL2 ZP_00378605 (474 aa) 62% ZP_00378066 (452 aa) 62% ZP_00378066 (452 aa) 29% ZP_00381218 (454 aa) 56%
Corynebacterium diphtheriae NCTC 13129 NP_939986 (478 aa) 67% NP_940011 (446 aa) 64% NP_940011 (446 aa) 25% NP_940011 (466 aa) 28%
C. efficiens YS-314 NP_738714 (477 aa) 70% NP_738737 (516 aa) 66% NP_738737 (516 aa) 29% NP_738737 (516 aa) 29%
C. glutamicum ATCC 13032 YP_226455 (477 aa) 70% YP_226471 (446 aa) 65% YP_226471 (446 aa) 29% YP_226471 (446 aa) 29%
C. jeikeium K411 YP_250482 (500 aa) 71% YP_250455 (448 aa) 71% YP_250455 (448 aa) 29% YP_250455 (448 aa) 29%
Frankia sp. EAN1pec YP_001506114 (474 aa) 66% YP_001506110 (452 aa) 65% YP_001510745 (496 aa) 38% YP_001505022 (470 aa) 56%
Janibacter sp. HTCC2649 ZP_00994949 (474 aa) 66% ZP_00995601 (445 aa) 70%   ZP_00995688 (446 aa) 42%   ZP_00997071 (461 aa) 59%
Kineococcus radiotolerans SRS30216 YP_001363019 (474 aa) 68% YP_001363024 (447 aa) 65% YP_001363024 (447 aa) 31% YP_001361387 (460 aa) 61%
Leifsonia xyli subsp. xyli str. CTCB07 YP_062980 (474 aa) 62% YP_061977 (445 aa) 63% YP_061977 (445 aa) 28% YP_061977 (445 aa) 32%
Mycobacterium avium 104 YP_881471 (478 aa) 90% YP_881448 (446 aa) 94% YP_882016 (450 aa) 80% YP_882894 (468 aa) 78%
M. bovis AF2122/97 NP_855893 (478 aa) 100% NP_855895 (446 aa) 100% NP_855562 (450 aa) 100% NP_856530 (457 aa) 100%
M. bovis BCG str. Pasteur 1173P2 YP_978326 (478 aa) 100% YP_978328 (446 aa) 100% YP_978005 (450 aa) 100% YP_978966 (475 aa) 100%
M. leprae TN NP_301707 (478 aa) 91% NP_302123 (448 aa) 93% NP_302123 (448 aa) 27% NP_302123 (448 aa) 29%
M. smegmatis str. MC2 155 YP_888567 (478 aa) 84% YP_888571 (446 aa) 88% YP_887864 (453 aa) 64% YP_886932 (457 aa) 74%
M. sp. KMS YP_939366 (478 aa) 85% YP_939374 (446 aa) 89% YP_936250 (437 aa) 47% YP_938091 (455 aa) 74%
M. tuberculosis CDC1551 NP_336749 (478 aa) 00% NP_336751 (446 aa) 100% NP_336385 (450 aa) 100% NP_337439 (457 aa) 100%
M. tuberculosis F11 ZP_01685137 (478 aa) 100% ZP_01685139 (446 aa) 100% ZP_01684789 (450 aa) 100% ZP_01685769 (462 aa) 100%
M. tuberculosis H37Rv NP_216736 (478 aa) 100% NP_216738 (446 aa) 100% NP_216394 (450 aa) 100% NP_217376 (457 aa) 100%
M. ulcerans Agy99 YP_905364 (478 aa) 90% YP_905360 (446 aa) 93% YP_905360 (446 aa) 27% YP_905360 (446 aa) 30%
M. gilvum PYR-GCK YP_001134193 (478 aa) 84% YP_001134174 (446 aa) 89% YP_001134583 (453 aa) 66% YP_001135323 (469 aa) 74%
M. vanbaalenii PYR-1 YP_954385 (478 aa) 85% YP_954396 (446 aa) 88% YP_953732 (442 aa) 64% YP_953098 (459 aa) 72%
Nocardia farcinica IFM 10152 YP_117877 (478 aa) 77% YP_117870 (446 aa) 83% YP_117870 (446 aa) 28% YP_117870 (446 aa) 31%
Nocardioides sp. JS614 YP_923487 (474 aa) 71% YP_923242 (455 aa) 66% YP_923242 (455 aa) 28% YP_923778 (464 aa) 59%
Propionibacterium acnes KPA171202 YP_055385 (473 aa) 66% YP_055378 (468 aa) 63% YP_055378 (468 aa) 30% YP_055378 (468 aa) 30%
Rhodococcus sp. RHA1 YP_701142 (478 aa) 81% YP_701152 (446 aa) 84% YP_701692 (433 aa) 47% YP_705251 (451 aa) 33%
Salinispora tropica CNB-440 YP_001160144 (474 aa) 70% YP_001160151 (451 aa) 68% YP_001160151 (451 aa) 29% YP_001160151 (451 aa) 30%
Streptomyces avermitilis MA-4680 NP_827182 (469 aa) 70% NP_827131 (453 aa) 69% NP_827131 (453 aa) 29% NP_827901 (454 aa) 65%
S. coelicolor A3(2) NP_626450 (469 aa) 71% NP_626490 (453 aa) 69% NP_626490 (453 aa) 28% NP_625889 (462 aa) 64%
Symbiobacterium thermophilum IAM 14863 YP_074027 (471 aa) 50% YP_074027 (471 aa) 33% YP_074027 (471 aa) 28% YP_074027 (471 aa) 32%
Thermobifida fusca YX YP_289049 (474 aa) 68% YP_289043 (453 aa) 68% YP_289043 (453 aa) 27% YP_289043 (453 aa) 28%
Marine actinobacterium PHSC20C1 ZP_01131573 (478 aa) 64% ZP_01129622 (445 aa) 62% ZP_01129567 (416 aa) 27% ZP_01129199 (455 aa) 70%
  1. GlnA protein sequences distribution in the Actinobacteria. The percentage similarity to the M. tuberculosis GS sequences is indicated by means of amino acid identity. The accession number and amino acid length of the protein sequence is indicated for each sequence.
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BMC Ecology and Evolution

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