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Table 1 Polymorphism in CYTB within focal regions for T. californicus

From: Investigations of fine-scale phylogeography in Tigriopus californicusreveal historical patterns of population divergence

Region Site Indivs. Hap. # Syn.1 Nonsyn. πsyn2 πtotal Taj-D3 FW-H4
Santa Cruz NB1 10 1 0 0 0 0 NA NA
  NB2 10 3 1 1 0.00127 0.00049 -0.69 0.44
  BH 10 2 1 0 0.00127 0.00031 0.01 -1.07
  SCN 15 3 5 3 0.00441 0.00184 -0.57 -1.41
  SC2 5 1 0 0 0 0 N/A N/A
  SC3 10 3 5 1 0.00618 0.00185 -0.06 -0.71
  SC4 10 2 3 3 0.00214 0.00106 -1.79* -6.04**
  SC5 10 2 4 1 0.00285 0.00088 -1.74* -4.44**
  LH 10 2 1 2 0.00198 0.00147 2.06* 0
  CCR1 10 3 6 2 0.00428 0.00141 -1.88* -2.13
  CCR2 10 3 6 3 0.00487 0.00173 -1.68+ -1.42
  Total 110 12 10 6 0.00996 0.00359 1.17 1.11
  Avg.   2.27    0.00266 0.0010   
Palos Verdes FR1 10 4 3 1 0.00308 0.00094 -0.9 -5.42**
  FR2 10 3 14 1 0.02316 0.00601 1.3 -1.07
  RsPt 10 7 9 0 0.00929 0.00230 0.8 -4.89*
  PVL 10 3 1 2 0.00071 0.00083 -0.43 -1.6
  ABR 10 1 0 0 0 0 N/A N/A
  AB1 11 5 8 1 0.01003 0.00287 0.22 1.31
  AB2 11 7 10 2 0.00861 0.00281 -0.98 -0.44
  AB3 10 8 12 3 0.00859 0.00267 -2** -3.2*
  IP 10 5 7 1 0.00559 0.00156 -1.64 -4*
  RP1 10 6 9 2 0.00996 0.00309 -0.46 -2.76+
  RP2 10 5 2 3 0.00272 0.00135 0.02 0.71
  Total 112 47 73 14 0.03399 0.00912 -1.08 -40.3***
  Avg.   4.91    0.00743 0.00222   
La Jolla SIO 14 3 1 1 0.00051 0.00036 -0.96 0.35
  LJP1 20 10 9 4 0.00753 0.00265 -0.66 -2.85+
  LJP2 13 5 11 1 0.00973 0.00263 -0.94 -7.02*
  LJP3 10 1 0 0 0 0 N/A N/A
  LJS 14 6 5 1 0.00299 0.00086 -1.73 -1.09
  NAUT 13 4 10 0 0.00556 0.00136 -2.09** -2.39*
  BR 14 7 11 1 0.01426 0.00361 0.33 -3.47+
  Total 98 32 37 7 0.0173 0.00457 -0.87 -8.9*
  Avg.   5.14    0.00580 0.00164   
Point Loma SD 20 7 13 0 0.00793 0.00193 -1.46 -1.21
  SCL 7 3 2 1 0.00206 0.00076 -1.35 -0.95
  LS 8 2 1 0 0.00090 0.00022 -1.05 0.21
  Total 35 12 16 1 0.00787 0.00198 -1.39 -0.88
  Avg.   4.00    0.00363 0.00097   
  1. 1Number of synonymous polymorphisms (syn.) or non-synonymous (nonsyn.)
  2. 2Average number of pairwise differences between sequences within a population for synonymous (πsyn), non-synonymous (πnon-syn), and all (πtotal) sites.
  3. 3Tajima's D value with significance indicated by an * (P < 0.05) or an ** (P < 0.01), and + indicating 0.05 < P < 0.1.
  4. 4Fay and Wu's H value with significance indicated by an * (P < 0.05), an ** (P < 0.01), or an *** (P < 0.001), and + indicating 0.05 < P < 0.1.