Table 3 Analysis of a large phylogenomic data set [29] consisting of 133 proteins from 40 taxa, 24294 sites for two competing trees under single frequency model and cF mixture model.
| Tree | Single frequency model (JTT + F + Γ) | Class-frequency mixture model (JTT + cF + Γ) |
|---|---|---|
| Microsporidia plus archaea clan | -745,292.15* | -738,445.15 |
| Microsporidia plus Fungi clade | -745,366.62 | -738,371.59* |