Table 4 Maximum-parsimony tree and evolutionary model parameters, Bayesian burn-in specifications for both individual data partitions and for the combined dataset

Score of MP trees

1578

174

1610

Consistency index of MP trees

0.407

0.759

0.475

Retention index of MP trees

0.844

0.883

0.779

Best evolutionary model (-lnL)

TrN+G (7887.1631)

HKY+G (1937.5226

n/a

Base frequencies (A, C, G)

0.3089, 0.3089, 0.0922

0.2902, 0.1695, 0.2296

n/a

Transition/transversion ratio

n/a

2.4813

n/a

Substitution rate matrix (AC, AG, AT, CG, CT)

1, 29.4411, 1, 1, 15.1094

n/a

n/a

Gamma shape parameter

0.2632

0.3180

n/a

Proportion of invariable sites

0

0

n/a

Burn-in of Bayesian analysis

100,000

10,000

75,000