Skip to main content

Table 1 Microsatellite loci and PCR conditions used in the present study, and population-wise number of alleles obtained for Indian chicken. Original references are listed in the table.

From: Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken

Locus Repeat motif Allele Size range Tm °C MgCl2 Total no. of alleles* Reference
      G. sonneratii G. g. murghi G. g. domesticus  
ADL210 (AC)15 116–130 46 1.5 mM 1 2 5 [41]
CALB1 (T)25 76–106 55 2.5 mM 2 3 3 [42]
HSF3A (GAG)10 230–259 55 1 mM 2 12 8 [42]
HUJ1 (GT)23 150–180 55 1.5 mM 4 11 7 [43]
MCW1 (GT)9 157–171 62 1.5 mM 1 6 5 [42]
MCW305 (GT)13 250–275 55 1.5 mM 3 3 7 [43]
MCW306 (AT)11 142–176 55 1.5 mM 4 9 6 [43]
MCW4 (TG)8 146–188 67 2.5 mM 2 15 3 [18]
MCW5 (TG)6AA(TG)6(A)15 (GA)2(GAA)21 184–263 62 1.5 mM 4 18 9 [18]
MYCN (TG)17 174–210 69 2 mM 4 12 5 [43]
VITIIG2 (TTTG)6 143–179 51 3 mM 5 15 1 [41]
Total      32 106 59  
  1. *No. of alleles obtained in the present study.