Taxona | Releaseb | Original TCsc | MaxORFsd | Clusterse | Final TCsf |
|---|
Arabidopsis thaliana
| 12.1 | 28900 | 23737 | 343 | 729 |
Glycine max
| 12.0 | 31928 | 13930 | 538 | 1065 |
Lotus japonicus
| 3.0 | 12485 | 3116 | 365 | 452 |
Medicago truncatula
| 8.0 | 18612 | 12254 | 528 | 852 |
Oryza sativa
| 16.0 | 36381 | 25842 | 199 | 418 |
Pinus
g
| 6.0 | 23531 | 13949 | 159 | 315 |
Solanum tuberosum
| 10.0 | 21063 | 12625 | 378 | 705 |
Total | Â | 172900 | 105453 | 577 | 4536 |
- a Taxon as given by TIGR for the EST collection assembled in the Gene Index Database.
- b Versions used in this paper, current as of 18 February 2006.
- c The 363,971 sequences in the database for these taxa were screened to include only those sequences assembled by TIGR into Tentative Consensus (TC) sequences.
- d TCs were trimmed to the largest sense-direction ORF that was at least 500 nt in length; shorter sequences were discarded.
- eNumber of clusters in which the taxon is represented, after screening for phylogenetic informativeness (at least three taxa and at least four sequences).
- f Total number of sequences from each taxon in the final set of clusters.
- gTIGR assembled this library from several species of Pinus.
