Figure 13
From: The effect of natural selection on the performance of maximum parsimony
MP reconstruction accuracies for PSeq-Gen PAM data. We plot the maximum parsimony reconstruction accuracy as a function of external branch length for 4 PSeq-Gen generated data sets. Two data sets use the PAM character substitution model; the other two use the uniform character substitution model. Two data sets use α = 1 to model significant ASRV. Two data sets use α = 100 to model little ASRV.