Site specific rates of mitochondrial genomes and the phylogeny of eutheria

Table 1 Mean model parameters and six character partitions and rate classes

Partitions	1	2	3	4	5	6
Character	1460	5138	1585	241	41	6275
Const.	0	0	0	0	0	4719
Inform	1460	5138	1585	241	41	459
RC	0.02	0.048	0.172	0.332	0.448	0.818
r(A<->C)	1E-05 ± 4E-05	0.26 ± 0.001	0.131 ± 0.005	0.113 ± 0.011	0.060 ± 0.026	0.124 ± 0.008
r(A<->G)	0.833 ± 0.107	0.444 ± 0.006	0.307 ± 0.010	0.235 ± 0.107	0.200 ± 0.066	0.299 ± 0.012
r(A<->T)	0.008 ± 0.007	0.042 ± 0.001	0.092 ± 0.004	0.129 ± 0.011	0.066 ± 0.029	0.110 ± 0.006
r(C<->G)	5E-05 ± 8E-05	0.021 ± 0.001	0.063 ± 0.005	0.118 ± 0.015	0.224 ± 0.070	0.128 ± 0.009
r(C<->T)	0.137 ± 0.101	0.280 ± 0.006	0.341 ± 0.010	0.284 ± 0.101	0.230 ± 0.064	0.274 ± 0.011
r(G<->T)	0.022 ± 0.003	0.186 ± 0.003	0.066 ± 0.004	0.121 ± 0.013	0.221 ± 0.071	0.065 ± 0.005
pi(A)	0.18 ± 0.04	0.44 ± 0.00	0.31 ± 0.01	0.32 ± 0.02	0.47 ± 0.09	0.25 ± 0.00
pi(C)	0.44 ± 0.02	0.29 ± 0.00	0.21 ± 0.01	0.21 ± 0.01	0.24 ± 0.05	0.23 ± 0.00
pi(G)	0.03 ± 0.01	0.06 ± 0.00	0.18 ± 0.01	0.19 ± 0.01	0.09 ± 0.03	0.21 ± 0.00
pi(T)	0.36 ± 0.02	0.21 ± 0.00	0.30 ± 0.01	0.28 ± 0.02	0.21 ± 0.04	0.32 ± 0.01
alpha	0.623 ± 0.170	0.932 ± 0.012	3.361 ± 0.260	42.83 ± 5.770	27.39 ± 615.515	0.879 ± 0.100
m	5.76 ± 0.41	1.17 ± 0.11	0.15 ± 0.01	0.11 ± 0.01	0.31 ± 0.40	0.01 ± 0.00

"Character" refers to the number of characters in a partition. "Const." is the number of constant (invariant) sites, and "Inform" is the number of parsimony informative sites. "RC" is the rescaled consistency index. The next six lines are the values from the rmatrix, followed by the percentages of each of the nucleotides. "Alpha" is the shape parameter from the gamma distribution, and "m" refers to the relative rates among partitions. Rates increase from classes 1 to 6.

ISSN: 2730-7182