Modelling the evolution of the archaeal tryptophan synthase

Table 3 Pairwise sequence similarity values of TrpB proteins

	Ssolfa_i2C	Ssolfa_o2C	Paerop_i2C	Paerop_o2C	Afulgi_i1E	Afulgi_o2E	Tmarit_i1B	Tmarit_o2B	Mmarip_s1E	Mkand_S1E	Ecoli_s1B
Tacido_S2E	49, 72, 2	76, 88, 0	47, 65, 2	46, 67, 1	26, 44, 17	46, 64, 2	32, 43, 18	47, 66, 2	28, 43, 12	30, 46, 11	26, 42, 6
Ssolfa_i2C	-	54, 75, 2	56, 71, 3	53, 72, 1	34, 48, 14	57, 72, 1	34, 47, 12	54, 73, 1	30, 46, 15	30, 45, 12	28, 42, 14
Ssolfa_o2C		-	50, 66, 2	52, 71, 1	33, 50, 13	47, 68, 1	32, 46, 13	48, 70, 1	28, 43, 16	30, 45, 11	27, 40, 10
Paerop_i2C			-	57, 68, 3	35, 49, 14	54, 63, 3	35, 50, 12	54, 65, 3	32, 48, 12	34, 46, 15	31, 43, 13
Paerop_o2C				-	30, 45, 13	63, 78, 1	32, 46, 13	60, 75, 1	28, 44, 16	33, 46, 11	28, 41, 16
Afulgi_i1E					-	31, 44, 11	65, 78, 0	36, 48, 10	65, 85, 0	65, 78, 0	59, 76, 1
Afulgi_o2E						-	34, 47, 12	64, 76, 0	30, 45, 9	32, 45, 9	29, 40, 12
Tmarit_i1B							-	35, 47, 11	61, 79, 1	64, 79, 1	58, 75, 1
Tmarit_o2B								-	34, 46, 9	32, 46, 8	29, 40, 12
Mmarip_s1E									-	59, 77, 0	58, 77, 0
Mkand_S1E										-	57, 72, 0

Note: The sequences represent species-types S2, i2_o2, i1_o2, s1, and S1. All pairs were compared by using BLAST with default parameters. For each pair, the fraction of identical residues, similar residues, and inserted gaps is given in percent. For the generation of protein names, see Results.

ISSN: 2730-7182