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Table 3 Pairwise sequence similarity values of TrpB proteins

From: Modelling the evolution of the archaeal tryptophan synthase

  Ssolfa_i2C Ssolfa_o2C Paerop_i2C Paerop_o2C Afulgi_i1E Afulgi_o2E Tmarit_i1B Tmarit_o2B Mmarip_s1E Mkand_S1E Ecoli_s1B
Tacido_S2E 49, 72, 2 76, 88, 0 47, 65, 2 46, 67, 1 26, 44, 17 46, 64, 2 32, 43, 18 47, 66, 2 28, 43, 12 30, 46, 11 26, 42, 6
Ssolfa_i2C - 54, 75, 2 56, 71, 3 53, 72, 1 34, 48, 14 57, 72, 1 34, 47, 12 54, 73, 1 30, 46, 15 30, 45, 12 28, 42, 14
Ssolfa_o2C   - 50, 66, 2 52, 71, 1 33, 50, 13 47, 68, 1 32, 46, 13 48, 70, 1 28, 43, 16 30, 45, 11 27, 40, 10
Paerop_i2C    - 57, 68, 3 35, 49, 14 54, 63, 3 35, 50, 12 54, 65, 3 32, 48, 12 34, 46, 15 31, 43, 13
Paerop_o2C     - 30, 45, 13 63, 78, 1 32, 46, 13 60, 75, 1 28, 44, 16 33, 46, 11 28, 41, 16
Afulgi_i1E      - 31, 44, 11 65, 78, 0 36, 48, 10 65, 85, 0 65, 78, 0 59, 76, 1
Afulgi_o2E       - 34, 47, 12 64, 76, 0 30, 45, 9 32, 45, 9 29, 40, 12
Tmarit_i1B        - 35, 47, 11 61, 79, 1 64, 79, 1 58, 75, 1
Tmarit_o2B         - 34, 46, 9 32, 46, 8 29, 40, 12
Mmarip_s1E          - 59, 77, 0 58, 77, 0
Mkand_S1E           - 57, 72, 0
  1. Note: The sequences represent species-types S2, i2_o2, i1_o2, s1, and S1. All pairs were compared by using BLAST with default parameters. For each pair, the fraction of identical residues, similar residues, and inserted gaps is given in percent. For the generation of protein names, see Results.