Figure 7
From: Evolutionary hierarchies of conserved blocks in 5'-noncoding sequences of dicot rbcS genes
Dendrograms of rbcS 5'-NCS relations constructed by 3 methods. Groupings highlighted for rosid (brassica and legume) genes, and the 3 solanaceous loci. Non-unique gene symbols prefixed with binomial species initials. (A) Hierarchical cluster analysis, with each sequence defined as vector of C LZ values from pairwise decomposition by each of the others. Numerals indicate nodes with multiscale bootstrap resampling values ≥ 50% obtained by PVCLUST. (B) Parsimony analysis by PAUP* of DIALIGN alignments. 50% majority-rule consensus of 234 most-parsimonious trees shown with bootstrap values ≥ 50%. (C) Parsimony analysis by PAUP* of sequences defined by block characters. 50% majority-rule consensus of 882 most-parsimonious trees shown with bootstrap values ≥ 50%.