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Table 1 Summary statistics of X-linked and autosomal loci

From: Similar Levels of X-linked and Autosomal Nucleotide Variation in African and non-African populations of Drosophila melanogaster

Genomic Location Number of Strains (NAa/NFb) Number of Sites (NAa/NFb) Divergencec θsd NAa θs/Divergencee NAa Tajima's D NAa θsc AFb θs/Divergencee AFb Tajima's D AFb
2R 12/12 486/411 0.06 9.05 (4.49–14.12) 1.38 (0.69–2.39) 0.51 5.04 (1.93–9.01) 0.78 (0.24–1.53) 1.07
2R 11/12 449/482 0.05 8.45 (4.10–13.64) 2.92 (1.11–5.94) 0.43 8.50 (3.93–13.11) 3.00 (1.24–6.08) -0.79
2L 11/11 325/487 0.06 5.65 (2.10 – 9.82) 1.01 (0.35–1.98) -0.79 13.21 (7.70–19.59) 2.40 (1.23–4.03) -0.77
2L 11/12 458/424 0.08 8.81 (4.19 – 13.78) 1.91 (0.85–3.52) -0.13 14.45 (9.17–20.90) 2.99 (1.61–5.26) -0.93
3R 12/9 402/474 0.06 7.65 (3.50 – 12.79) 1.27 (0.56–2.36) -0.75 24.30 (15.93–32.62) 3.96 (2.33–6. 40) -0.84
3R 12/11 322/329 0.06 14.49 (8.65 – 20.96) 2.78 (1.38–4.89) -0.53 15.64 (9.57–22.07) 2.98 (1.60–5.32) 0.31
3L 11/12 444/462 0.07 10.24 (5.14 – 15.42) 2.16 (1.07–3.89) -0.48 36.27 (27.55–46.00) 7.56 (4.66–11.95) 1.02
3L 12/12 412/365 0.06 9.46 (4.39 – 15.35) 1.97 (0.92–3.48) -0.12 25.88 (17.77–34.15) 5.36 (3.07–9.15) -1.46
X 12/11 356/394 0.07 16.24 (10.61–22.72) 4.35 (2.13–8.12) 0.67 18.43 (11.63–25.82) 4.93 (2.49–9.18) -1.12
X 12/11 391/385 0.08 5.49 (1.57 – 9.44) 0.87 (0.31 – 1.70) 0.33 16. 41 (9.85–23.28) 2.61 (1.33–4.65) 0.88
X 10/10 346/485 0.05 5.01 (0.91 – 10.14) 1.45 (0.32–3.00) 0.015 12.53 (7.64–18.79) 3.68 (1.85–7.12) -1.02
X 12/11 447/406 0.09 15.69 (9.29–22.79) 3.20 (1.60–5.59) 0.74 39.06 (28.89–48.99) 7.95 (4.81–12.95) -0.30
X 12/11 383/355 0.12 5.97 (1.72–11.18) 0.48 (0.16–0.94) -0.49 28.28 (18.56–37.94) 2.22 (1.35–3.47) -1.21
X 12/10 458/481 0.07 15.05 (9.13–22.23) 2.32 (1.21–3.93) 1.25 15.94 (9.69–22.31) 2.52 (1.40–4.12) -.0.42
X 12/12 474/471 0.03 0.68 (0 – 2.09) 0.56 (0.23–1.63) -1.14 9.01 (4.84–14.52) 5.28 (2.00–12.95) -1.66
X 12/12 441/410 0.03 2.19 (0–5.17) 1.08 (0.23–2.77) –0.38 2.24 (0–5.15) 1.09 (0.23–3.21) -0.83
Average Overall     9.00 (7.70–10.20) 1.72 (1.46–2.00)   17.52 (15.73–19.17) 3.36 (2.96–3.76)  
Average autosomal     9.39 (7.75–11.08) 1.79 (1.39–2.19)   17.79 (15.24–20.24) 3.35 (2.78–4.03)  
Average X linked     8.51 (6.90–10.29) 1.67 (1.27–2.13)   17.30 (15.02–19.93) 3.38 (2.74–4.13)  
  1. a North American
  2. b African
  3. c Divergence with D. simulans
  4. dθ s × 103 with (95% confidence interval)
  5. eθ s /Divergence × 10 with (95% confidence interval
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BMC Ecology and Evolution

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