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Table 3 Gene-specific oligonucleotides for cloning and expression analyses of dog CEA family members

From: Species-specific evolution of immune receptor tyrosine based activation motif-containing CEACAM1-related immune receptors in the dog

gene

oligonucleotide name

oligonucleotide sequence

location of primers (exon)

size of PCR product (bp)*

CEACAM1

cfCEACAM1-5i-f

cfCEACAM1-3i-r

5'-CGGCAGCTGCTCTCACC

5'-CCAGCAGGACAGGTTGCAT

5'-UTR

3'-UTR

1624

 

CEACAM1cf-5i

CEACAM1cf-3i

5'-GTCATGAAGCTTCGGCAGCTGCTCTCACC

5'-GTCAGTTCTAGACCAGCAGGACAGGTTGCAT

5'-UTR

3'-UTR

1648

 

cfCEACAM1TM-f

cfCEACAM1C3-r

5'-AGTTCTGGCCTTCCACCTG

5'-GGATGAGGAGGCTGAAGTTG

TM domain

Cyt 3

270

 

cfCEACAM1N-f

cfCEACAM1C3-r

5'-CATCACCCTGAACGACACTG

5'-GGATGAGGAGGCTGAAGTTG

N domain

Cyt 3

1183

CEACAM23

cfaCC23-N-fo

cfaCC23-T-re

5'-TCCAGAACATCACCCTGAGC

5'-GACACCCCAGGGAAGCTG

N domain

TM domain

1008

 

cfCEACAM1-5i-f

cfaCC23-3-re

5'-CGGCAGCTGCTCTCACC

5'-GAGCAGTACCATGGGGAAAC

5'-UTR

3'-UTR

1616

CEACAM24

cfaCC24-N-fo

cfaCC24-T-re

5'-GTAGTAGACACACGAGTAATTGT

5'-CACAAGCGCTACTCCAATCA

N domain

TM domain

258

 

cfCEACAM1-5i-f

cfaCC24-3-re

5'-CGGCAGCTGCTCTCACC

5'-GAGGGTTCCAGGGTGAAACT

5'-UTR

3'-UTR

1069

CEACAM25

cfaCC25-N-fo

cfaCC25-T-re

5'-AATCTGCCTGGGGATCTTCT

5'-AATACGCCAGGGTAGCCATG

N domain

TM domain

352

 

cfCEACAM1-5i-f

cfaCC25-3-re

5'-CGGCAGCTGCTCTCACC

5'-GGAAGGAGGGTTCCAAGGT

5'-UTR

3'-UTR

807

CEACAM28 (CEACAM30)**

cfaCC28-N-fo

cfaCC28-T-re

5'-TTTGAAACTGCACTAATACGG

5'-TTGTGTGGAGCAGGAGACA

N domain

TM domain

703 (427)

 

cfCEACAM1-5i-f

cfaCC28-3-re

5'-CGGCAGCTGCTCTCACC

5'-GGAAGGAGAAGTGTCATGAGGT

5'-UTR

3'-UTR

1374 (1095)

CEACAM29

cfaCC29-N-fo

cfaCC29-T-re

5'-ACATCACCGTGAATAATGCC

5'-CGAGTGCTAGTTCGAGCAGA

N domain

TM domain

447

 

cfCEACAM1-5i-f

cfaCC29-3-re

5'-CGGCAGCTGCTCTCACC

5'-CAGAAGGTTACAGGGGCTCA

5'-UTR

3'-UTR

844

  1. * Size of largest cloned or predicted (CEACAM29) splice variant is shown
  2. ** CEACAM30 cDNA were also detected using the CEACAM28 primers (size of PCR products in brackets)
  3. Cyt, cytoplasmic domain; TM, transmembrane domain; UTR, untranslated region