Table 1 Over- and under-represented GO categories among genes retained after the P. patens genome duplication
GO category/KO pathway | description | No. of annotated genes in the peak | No. of annotated genes in the reference set | fdr corrected p-value |
|---|---|---|---|---|
enriched | Â | Â | Â | Â |
GO:0006091 | generation of precursor metabolites and energy | 80 | 35 | 0.0029 |
GO:0009058 | biosynthesis | 119 | 67 | 0.0109 |
reduced | Â | Â | Â | Â |
GO:0006412 | protein biosynthesis | 54 | 82 | 0.0424 |
GO:0006996 | organelle organization and biogenesis | 28 | 67 | 0.0005 |
GO:0007010 | cytoskeleton organization and biogenesis | 3 | 19 | 0.0059 |
GO:0007028 | cytoplasm organization and biogenesis | 27 | 62 | 0.0010 |