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Table 3 Estimates of viral diversity close to the time of transmission

From: Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

Patient Best-fitting demographic model μ a b close to transmissionc
     Meand HPDe upper
Horizontal transmission     
p1 Logistic 0.0123 2293 36.00 153.19
p2 Logistic 0.0166 4441 27.98 148.32
p3 Logistic 0.0175 1612 29.02 80.12
p5 Exponential 0.0223 2439 287.78 670.67
p6 Logistic 0.0195 1511 7.86 20.39
p7 Logistic 0.0085 8632 253.78 1173.95
p8 Exponential 0.0162 6003 1722.98 2911.65
p9 Logistic 0.0071 7168 1283.11 3211.35
p11 Logistic 0.0128 6505 9.76 34.48
Mean   0.0148 4512 406.47 933.79
Vertical transmission     
p1 Logistic 0.0201 4183 15.48 79.99
p2 Constant 0.0560 275 275.46 511.97
p3 Constant 0.0163 383 383.27 714.69
p4 Exponential 0.0098 67696 1214.76 5810.63
p5 Exponential 0.0133 7372 1360.46 3444.98
p6 Constant 0.0251 183 181.98 323.10
p7 Exponential 0.0226 1165 151.26 294.62
p8 Constant 0.0145 521 521.84 857.01
p9 Exponential 0.0120 2740 191.34 405.22
p10 Logistic 0.0188 1050 384.47 877.21
p11 Logistic 0.0163 740 410.67 926.82
p12 Exponential 0.0206 1730 121.83 254.40
p13 Exponential 0.0218 2603 81.27 173.89
p14 Exponential 0.0164 1865 208.00 411.70
p15 Logistic 0.0397 889 1.55 4.80
p16 Logistic 0.0173 269904 261.90 577.67
p18 Logistic 0.0097 146723 960.34 1978.63
p19 Exponential 0.0095 2842 342.42 655.38
p21 Exponential 0.0053 302840 1712.90 4936.78
p22 Exponential 0.0046 547670 3159.60 11050.00
p23 Logistic 0.0093 123360 371.85 706.09
p24 Logistic 0.0102 97018 524.69 814.59
p25 Logistic 0.0071 2508 2194.63 4321.04
pa Constant 0.0280 640 638.53 895.76
pb Constant 0.0076 2006 2000.48 3593.83
pc Constant 0.0094 879 879.45 1626.67
pd Constant 0.0146 254 254.26 526.95
Mean   0.0169 58890 696.47 1732.39
  1. aSubstitution rate in number of changes per site per year
  2. bProduct of the effective population size and generation time in days at the most recent time point
  3. cSeroconversion or birth for horizontally and vertically infected patients respectively
  4. dMean of the marginal posterior probability distribution of parameter values
  5. eHighest Posterior Density