Skip to main content

Table 2 Parameter estimates used to calculate the percentage diversity that survived transmission

From: Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

Parameter Meana HPDb Lower HPD Upper ESSc
env V1-V4     
N R τ 1216.7 534.4 2033.9 1338.94
N D τ 1014.0 541.2 1538.0 955.71
t trans d 30.9 15.2 46.9 174.57
N R τ(t trans ) 1.6 1.0 3.1 2456.87
δ 0.17 0.06 0.35 2043.08
gag p24     
N R τ 926.6 419.9 1512.6 1454.31
N D τ 770.7 413.5 1184.7 1356.90
t trans d 42.4 27.5 53.0 274.51
N R τ(t trans ) 2.0 1.0 4.5 3532.69
δ 0.29 0.07 0.67 3310.56
  1. aMean of the marginal posterior probability distribution of parameter values
  2. bHighest Posterior Density encompassing 95% of the marginal posterior distribution of parameter values
  3. cEffective Sample Size (number of independent samples taken from the posterior distribution of values for a particular parameter)
  4. dEstimated time of transmission in days prior to the day of the fist recipient sample (day 0)