From: Reconstruction of ancestral protein sequences and its applications
SCOP Superfamily/family | PDB structure | New homologs | NCBI annotation |
---|---|---|---|
Nucleic acid-binding proteins/ Anticodon-binding domain | 1b7yB, 39–151 | N/A | - |
 | 1b8aA, 1–102 | N/A | - |
 | 1bbuA, 64–151 | 13431467 | DNA polymerase II small subunit |
 |  | 15598836 | DNA polymerase III, alpha chain |
 | 1c0aA, 1–106 | 11261591 | DNA polymerase III, alpha chain |
 |  | 11499379 | conserved hypothetical protein |
 |  | 1169392 | DNA polymerase III alpha subunit |
 |  | 118794 | DNA polymerase III alpha subunit |
 |  | 13620707 | putative DNA polymerase III, alpha chain |
 |  | 14194684 | DNA polymerase III alpha subunit |
 |  | 14194702 | DNA polymerase III alpha subunit |
 |  | 14195653 | DNA polymerase III alpha subunit |
 |  | 14195659 | DNA polymerase III alpha subunit |
 |  | 15594924 | DNA polymerase III, subunit alpha |
 |  | 15598836 | DNA polymerase III, alpha chain |
 |  | 15601899 | DnaE |
 |  | 15642243 | DNA polymerase III, alpha subunit |
 |  | 15669005 | M. jannaschii predicted coding region MJ0818 |
 |  | 15679404 | DNA polymerase delta small subunit |
 |  | 3914611 | ATP-dependent DNA helicase recG |
 | 1cuk, 1–64 | N/A | - |
 | 1e1oA, 64–148 | 11261591 | DNA polymerase III, alpha chain XF0204 |
 |  | 14194684 | DNA polymerase III alpha subunit |
 | 1fguA, 181–298 | 15219507 | hypothetical protein |
 |  | 15230563 | putative protein |
 |  | 15790309 | Vng1255c from Halobacterium sp. |
 |  | 6166145 | DNA polymerase III alpha subunit |
 |  | 8778702 | T1N15.20 |
 | 1fl0A | 10957481 | hypothetical protein |
 | 1g51A, 1–104 | 14520587 | hypothetical protein |
 |  | 14591565 | hypothetical protein |
 |  | 15595886 | hypothetical protein |
 |  | 3914638 | ATP-dependent DNA helicase recG |
 | 1otcB, 36–126 | N/A | - |
 | 1quqA, 62–152 | 15387767 | probable replication protein a 28 Kd subunit |
 | 1qvcA, 1–114 | N/A | - |
Nucleic acid-binding proteins/Cold shock DNA-binding domain like | 1a62, 48–125 | N/A | - |
 | 1ah9 | N/A | - |
 | 1bkb, 75–139 | 15790688 | translation initiation factor eIF-5A; Eif5a |
 | 1c9oA | 6014735 | Cold shock protein CspSt |
 | 1csp | N/A | - |
 | 1d7qA | N/A | - |
 | 1mjc | N/A | - |
 | 1rl2 | N/A | - |
 | 1sro | 15671445 | N utilization substance protein A |
 |  | 15794781 | N utilisation substance protein A |
 |  | 15803711 | transcription pausing; L factor |
 | 2eifA, 73–132 | N/A | - |
Nucleic acid-binding proteins/DNA ligase, mRNA capping enzyme, domain2 | 1a0i, 241–349 | N/A | - |
 | 1dgsA, 315–400 | N/A | - |
 | 1ckmA, 238–302 | N/A | - |
 | 1fviA, 190–293 | N/A | - |
Nucleic acid-binding proteins/Phage ssDNA-binding proteins | 1gpc | N/A | - |
 | 1gvp | N/A | - |
 | 1pfs | N/A | - |
Nucleic acid-binding proteins/RNA polymerase subunit RBP8 | 1a1d | N/A | - |
Staphylococcal nuclease/Staphylococcal nuclease | 1eyd | 13422779 | aldose 1-epimerase * |
Bacterial enterotoxins/Bacterial AB5 toxins, B units | 1c4qA | N/A | - |
 | 1prtF | N/A | - |
Bacterial enterotoxins/Superantigen toxins | 1an8, 19–94 | N/A | - |
TIMP-like/Tissue inhibitor of metalloproteases | 1ueaB, 14–106 | N/A | - |
Inorganic pyrophosphatase/ Inorganic pyrophosphatase | 2prd | N/A | - |
MOP-like/BiMOP, duplicated molybdate-binding domain | 1b9mA, 127–262 | 10639288 | probable ATP-binding protein |
 |  | 10955070 | AgtA |
 |  | 1175513 | Putative ferric transport ATP-binding protein afuC |
 |  | 15598450 | probable ATP-binding component of ABC transporter |
 |  | 3978166 | ATPase FbpC |
 |  | 4895001 | glucose ABC transporter ATPase * |
Histidine kinase CheA, C-terminal domain/ Histidine kinase CheA, C-terminal domain | 1b3qA, 540–671 | N/A | - |