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Table 2 Primers used for PCR analysis.

From: Evidence for the adaptive significance of an LTR retrotransposon sequence in a Drosophila heterochromatic gene

Primer

Sequence

Position 1

cht3(f)

5'-TGATGCCATACTCCTACTCCGTAAC-3'

27910:27934

cht3(f2)

5'-ATGAAAAACGGATGGACAGCC-3'

18549:18569

cht3(r)

5'-CATTCCTGTTTGCCAACCCC-3'

28395:28376

Antonia LTR(f)

5'-TTAAGCGAACGTCGGAGAC-3'

21299:21317

Antonia LTR(r)

5'-CCACTAGAAGGGTGAAAACTGC-3'

21570:21549

cathD(f)

5'-GGTGAAGCCGCCATTTTACG-3'

220780:220799

cathD(r)

5'-CGCCCAGCACAAACTTGATTAC-3'

221240:221219

Burdock LTR(f)

5'-TGACCGACGCTTCTAATCTTCC-3'

221638:221659

Burdock element(r)

5'-GGTTGGCAGTATGGGAACTTAGTG-3'

221918:221895

  1. 1 Position is relative to location of first nucleotide within clone, AE002743 for cht3 or AE003839 for cathD.