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Table 2 Results of topology tests

From: The evolution of paralogous enzymes MAT and MATX within the Euglenida and beyond

 

KH

WKH

SH

WSH

MATX (1)

0/ 0

0/ 0

7*10 -6 /0

0/ 0

MATX excl. APLD (2)

0/ 0

0/ 0

1*10 -4 /2*10 -4

5*10 -5 /4*10 -6

MATX rooted (3)

8*10 -6 /0

1*10 -5 /0

0.001/2*10 -5

1*10 -4 /0

MATX rooted exl. APDL (4)

0/ 0

0/ 0

0.001/0.001

2*10 -4 /2*10 -4

MATX euglenids (5)

0.004/0.004

0.003/0.003

0.25/0.246

0.209/0.172

  1. The p-values of significance for differences between likelihoods of MATX gene tree vs. likelihoods of species trees. In each cell are given p-values using species tree inferred from phylogeny of SSU rRNA/species tree based consensus from a literature. The tests were performed for five sets of taxa: (1) full MATX data set, (2) MATX excluding Aureococcus, Prymnesium, Lactuca and Dendroctonus (excl. APLD), (3) rooted full MATX data set, (4) rooted MATX excl. APLD and (5) MATX of euglenids. Four tests were used: Kishino Hasegawa (KH), weighted Kishino Hasegawa (WKH), Shimodaria Hasegawa (SH), weighted Shimodaria Hasegawa (WSH). P-values = < 0.001 are given in bold.
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BMC Ecology and Evolution

ISSN: 2730-7182

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